Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2237 ATGGAAATGGCTTCTAGTCCTCGCACTGTTGAAGAGATCTTCAAAGATTATAACGCTCGAAGAATCGGTGTTGTTCGTGCTTTGACTCATGATGTTGATGAATTTTATGGGCTCTGTAATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAAACATGGGAAGTAACTCTGCCAGCAGAAGAAGTTCCACCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCCGGGACTGGCTGTCTCTTGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCATTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATTAATGATCTTCCTACAGTTTTCGAAGTTGTTACTGACAGGAAACCAATTAAGGAAAAGCCCACTGTGGATAGTGGAAGCAAATCTCGAGGAAGCACCAAGAGATCCAGTGACGGGCAAGTTAAAAGCAACCCGAAGTTTGATGAGGGATATGAGGAGGAGGAAGAAGATGAGCATAGTGAAACCCCTTGTGGTAGCTGCGGCGGCAAATATTACAAGACACATGAATTTTGGATTGCCTGTGATATATGTCAGAGGTGGTTCCATGGAAAATGTGTGAAGATGACTCCTGCAAAAGCTGATAGCATAAAGCATTACAAATGCCCTACATGCAGCTTAAGGAGGGGCAGACCCTAA 723 0.4467 MEMASSPRTVEEIFKDYNARRIGVVRALTHDVDEFYGLCNPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKEKPTVDSGSKSRGSTKRSSDGQVKSNPKFDEGYEEEEEDEHSETPCGSCGGKYYKTHEFWIACDICQRWFHGKCVKMTPAKADSIKHYKCPTCSLRRGRP 240
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2237 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Lal1g2237 240 ProSitePatterns Zinc finger PHD-type signature. 186 233 IPR019786 -
Lal1g2237 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 234 IPR013083 -
Lal1g2237 240 Pfam PHD-finger 186 234 IPR019787 -
Lal1g2237 240 CDD PHD_AL_plant 185 236 IPR044104 -
Lal1g2237 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Lal1g2237 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
Lal1g2237 240 MobiDBLite consensus disorder prediction 140 186 - -
Lal1g2237 240 MobiDBLite consensus disorder prediction 148 162 - -
Lal1g2237 240 SMART PHD_3 185 234 IPR001965 -
Lal1g2237 240 ProSiteProfiles Zinc finger PHD-type profile. 183 236 IPR019787 -
Lal1g2237 240 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal1g2237 Lal-Chr1 24324244 24328340 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2237 4 239 Alfin-like Transcription Factor Family AT5G05610 72.996 2.46e-113 323
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal1g2237 Alfin 1.4e-67 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2237 - - gmx:100782478 430.639
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2237 1 24324244 24328340 Lal1g2237 1 24324244 24328340 ECH