Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2221 ATGGCTTCAGATTCTCTTCCAAATTTTAATATGGATTCTAGAACAATGAATAGGGGAATTGAAGTTCTGTCACTAGCTTCCAATCTCCAAACTTCAAACTGGTTGTTCCAAGAAAGCAAAGGAGGGGCACAATGGACTCCACAAGAGAACAAGTTGTTTGAAAATGCTTTGGCTTTTTACGATAAGGACACGCCGGATCGATGGCTTAGAGTAGCAGCTATGATTCCAGGCAAAACTGTTGGTGATGTGATCAAACAGTATAAGGAATTGGAAGAAGATGTAAGTGTCATTGAAGCAGGTTTAATCCCAGTTCCTGGTTATAGTACTAGTTCCTTCACACTAGAGGGGATTGAGGTTGAAAATCACGGTTTCGATCGGTTCGAGCAATTTTATAGTGTTGGTGGGAAAAGGGGTGCTTCCACTAGGCCATCTGAGCAGGAAAGAAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTGCTTATCATAACCCTTTTTTTTGCTTTGTTATTTCTGCTTGGTCTTAAGAAGTATGGCAAAGGGGACTGGAGAAACATCTCTAGGAAGTTTGTGACGACACGGACACCGACTCAAGTCGCAAGTCATGCTCAGAAGTATTTTATTAGGCAGCTTACAGGAGGCAAGGATAAGAGGAGATCCAGTATCCATGATATCACAATGGTCAATCTCTCGGAAACAAAATCGCCTTCTTCGGACAGTGATCGGCCTCATTCTCCAGGGCACTCGACCAAGGTTGCGAATCAACAGCAGAATCAGAAATTGTCTAGCATGATCAAACAAGAATATGACTGGAACTTACCATACGAGGGCATGCCGATGGTTTTCAATTCGACGAATGGAAACAAGTTCGATGCATCACTGCTCGAGATTTCTTCATATGGATCTAAACCACAGGAGCATAATTTACTCAAAGGCACTCTCTATGGATGCCAATTTGGACCTTATGATACTGTTTTGTAA 987 0.4255 MASDSLPNFNMDSRTMNRGIEVLSLASNLQTSNWLFQESKGGAQWTPQENKLFENALAFYDKDTPDRWLRVAAMIPGKTVGDVIKQYKELEEDVSVIEAGLIPVPGYSTSSFTLEGIEVENHGFDRFEQFYSVGGKRGASTRPSEQERKKGVPWTEEEHRQLLIITLFFALLFLLGLKKYGKGDWRNISRKFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLSETKSPSSDSDRPHSPGHSTKVANQQQNQKLSSMIKQEYDWNLPYEGMPMVFNSTNGNKFDASLLEISSYGSKPQEHNLLKGTLYGCQFGPYDTVL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2221 328 SUPERFAMILY Homeodomain-like 44 98 IPR009057 -
Lal1g2221 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 213 IPR017930 -
Lal1g2221 328 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 24 323 - -
Lal1g2221 328 MobiDBLite consensus disorder prediction 230 261 - -
Lal1g2221 328 ProSiteProfiles Myb-like domain profile. 146 209 IPR001005 -
Lal1g2221 328 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 323 IPR043363 -
Lal1g2221 328 SMART sant 150 211 IPR001005 -
Lal1g2221 328 SMART sant 41 93 IPR001005 -
Lal1g2221 328 SUPERFAMILY Homeodomain-like 147 212 IPR009057 -
Lal1g2221 328 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 212 IPR006447 GO:0003677
Lal1g2221 328 Gene3D - 170 213 - -
Lal1g2221 328 CDD SANT 153 209 IPR001005 -
Lal1g2221 328 CDD SANT 45 90 IPR001005 -
Lal1g2221 328 Pfam Myb-like DNA-binding domain 172 209 IPR001005 -
Lal1g2221 328 Gene3D - 37 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2221 Lal-Chr1 24169617 24171443 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g2221 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2221 - - var:108329798 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2221 1 24169617 24171443 Lal22g0242 22 1511667 1513969 ECH
Lal1g2221 1 24169617 24171443 Lal3g0575 3 4350942 4353198 ECH
Lal1g2221 1 24169617 24171443 Lal1g2221 1 24169617 24171443 ECH
Lal1g2221 1 24169617 24171443 Lal22g0370 22 2383737 2386250 ECH
Lal1g2221 1 24169617 24171443 Lal5g0915 5 10961450 10963494 ECH
Lal2g1901 2 21263653 21266258 Lal1g2221 1 24169617 24171443 LSH