Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2218 ATGGGGCGGATCCGGAGTTGCGTTACTACCTCTGAAATTCGCAATCACATAAAGCAAAGTAATTTGAATCAACCAGATGCATTACGTTTGCAAAGTTGTTCTTGTTTACATTATTTATTGGAGCAAAATCTCAGGACCGCTAAGGGTTTTCTTCTTTCAAGGACTAATGTGGAAAATGCCTCATCTTTAAAGGACCAACTTAAGGGTTTACTCTATATATCGTTCATTCGGCTTAGTAGGGCTCCTGCCTCAGAAGGGTCAGCAGGGGCAAAGCTGTCACCTTTCGAGACTGTCATGGTTGCGTGCCCAGACCATCTTGTCCTTGCTGATCTCCCTGTTGCGAAGGGCATTGGAGGAGCTACTGCTGCTTCACATGTTAAAACTTTGGGACGTAGATCCCGCCGCCAACTTGGTGAGCGAGTTCATTTCTGTGTTCGTTGTGATTTCCCAATTGCTATCTATGGACGACTGATTGTTTGCAAAGCACTAGATTTAGGAGATCTTGGTTTCAGCCTCACTGGGCCCCCTTTTCTAACTGGAAGAGTTTTCCTTGTCAAAATGTGTGACGAACGAATCCAAAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATATGTGCAGCTCCTCACTGTCTGAAATCTTTCCTGAAGAAGGCTGATTTTGAATCCCATGTCCAAGACGTCCATGCTAACCTTCTTCGATCAAATGCAGACAAAGAAGATGGAAACGAGTCAGAAGTACAAAGTGTCAGGCAATCTACTGCTTCAGATTCCACTGCTCGGGGTCCCCAAAGACCAGTTTTTTCTCCCACTTCAAATCCCCAGCTCCATGATCAGGAAGAAAAAACTCGTCGACAACCACCAAGAGATCAACCACCTTCATGGCCAAATATGCAGTCAAAGCCACCATATTTCGGTCAACAGCATCACCCTTCAGATGCCCCTTCCGGCTCCATTGGAGGTTTTCAACAAGGGTTCCATCAACAAAGTTTTGATATACACCATCCATCGATAGAACCTTCGCAGTTTTCAGACAGGCAGCAATCAGTTGGTCCAGAGTATCCACCGATGCACTCAGGCCAGCCTCCCAACATCCCTACACAGGTTACTTCAAACCCGATGCTGAACCCTCCTGTGCCATTTGGTTACCCTCCTTACCCACATGAAAGAGGTCAACCATTTTATGCTGCTCCATATGATAATATTCCTAAGCAGGACTCAGCTTCTGATATAAGTAGGGACCAGAATTCATTACTTGGTTTCCCACAAGGTGGTGTCCCAAAATTTCCAGGAAATTATCCCCAGTCCTGGCATGCTGGAATGGGTGGGGCGCCTTTTGAACAAGGACAAGGTGGTATGGCAGTAGATCCAAGGGATGCCAAAGGTGTATTGGCACCACAGCCTGTGGCCGCACCACCACCACCCCCGCCAGCGACCCACATGTCACATATGAAACCGAATTACTATTCTAATGAGGGTGGACATGATCATGGTCAGGGTTATGGGTGGCAGCAGCAGCACGATAACCGTGATAGTTTTGGTGGCCAAGGCTAG 1557 0.4676 MGRIRSCVTTSEIRNHIKQSNLNQPDALRLQSCSCLHYLLEQNLRTAKGFLLSRTNVENASSLKDQLKGLLYISFIRLSRAPASEGSAGAKLSPFETVMVACPDHLVLADLPVAKGIGGATAASHVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLIVCKALDLGDLGFSLTGPPFLTGRVFLVKMCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHVQDVHANLLRSNADKEDGNESEVQSVRQSTASDSTARGPQRPVFSPTSNPQLHDQEEKTRRQPPRDQPPSWPNMQSKPPYFGQQHHPSDAPSGSIGGFQQGFHQQSFDIHHPSIEPSQFSDRQQSVGPEYPPMHSGQPPNIPTQVTSNPMLNPPVPFGYPPYPHERGQPFYAAPYDNIPKQDSASDISRDQNSLLGFPQGGVPKFPGNYPQSWHAGMGGAPFEQGQGGMAVDPRDAKGVLAPQPVAAPPPPPPATHMSHMKPNYYSNEGGHDHGQGYGWQQQHDNRDSFGGQG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2218 518 MobiDBLite consensus disorder prediction 235 368 - -
Lal1g2218 518 MobiDBLite consensus disorder prediction 248 277 - -
Lal1g2218 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 163 IPR013083 -
Lal1g2218 518 MobiDBLite consensus disorder prediction 301 350 - -
Lal1g2218 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 76 488 - -
Lal1g2218 518 MobiDBLite consensus disorder prediction 451 518 - -
Lal1g2218 518 MobiDBLite consensus disorder prediction 468 482 - -
Lal1g2218 518 ProSitePatterns Zinc finger C2H2 type domain signature. 207 230 IPR013087 -
Lal1g2218 518 MobiDBLite consensus disorder prediction 503 518 - -
Lal1g2218 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 76 488 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2218 Lal-Chr1 24124266 24128171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2218 76 443 C2H2 Transcription Factor Family AT5G01160 45.503 9.52e-85 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2218 K15685 - gmx:100817582 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2218 1 24124266 24128171 Lal1g2218 1 24124266 24128171 ECH
Lal2g1893 2 21209267 21212626 Lal1g2218 1 24124266 24128171 LSH