Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2211 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCATATGCTTAAGAAATGCATTGAACAATATGGAGAAGGAAAGTGGCATAGAGTTCCTCTTTTGGCTGGTCTAAACAGGTGCAGAAAGAGTTGCAGGCTAAGATGGTTGAACTATCTCCGTCCTAACATTAAAAGAGGACGTTTTGGAGAGGAAGAAATAGAAATGATTATTAAACTCCATAAATTATTAGGCAACAGGTGGTCACTAATTGCAGGAAGGCTACCAGGAAGAACTGCCAATGATGTAAAGAACTATTGGAACTGTCATCTGAGTAAGAAACTGAGTGCTCTAGAAGCCAAGAACACACAAATAAACAGAAAAACTGAATCTATTAGGCCAAATGAGCCCAAAATCAATATTGGTTCAAGCTCAGTAAAGAGAAGGAGCTTGCCTAGTGAATGTTCAACTAACCAAGGAACTCAACAACAAGAAAGTGCAATTTCCTCTTTAACATTTGATCCTGAAAGAGAGAGCCATATTGTTGAACCACAACAAGAAAACATATATTCATGTTTGCACCAACAAGGTATTATTGATGAGTTACCAATGGATTTCAAATATGAAGGTGTTGAGGCAATGGTAAGTGGAGTGGGTAGTAGTACAAATCAATGGGATTGGGATGATTTGCTCTTAGATATGGATTTGTATAATGGGTTTTCTTCTTAG 699 0.3791 MGGVAWTEEEDHMLKKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGRFGEEEIEMIIKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLSALEAKNTQINRKTESIRPNEPKINIGSSSVKRRSLPSECSTNQGTQQQESAISSLTFDPERESHIVEPQQENIYSCLHQQGIIDELPMDFKYEGVEAMVSGVGSSTNQWDWDDLLLDMDLYNGFSS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2211 232 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Lal1g2211 232 Gene3D - 4 55 - -
Lal1g2211 232 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lal1g2211 232 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Lal1g2211 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Lal1g2211 232 PANTHER MYB TRANSCRIPTION FACTOR 5 228 - -
Lal1g2211 232 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Lal1g2211 232 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Lal1g2211 232 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 228 - -
Lal1g2211 232 Gene3D - 58 129 - -
Lal1g2211 232 SMART sant 55 103 IPR001005 -
Lal1g2211 232 SMART sant 2 52 IPR001005 -
Lal1g2211 232 MobiDBLite consensus disorder prediction 118 159 - -
Lal1g2211 232 CDD SANT 58 101 IPR001005 -
Lal1g2211 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Lal1g2211 232 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2211 Lal-Chr1 24059765 24061313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2211 5 148 MYB Transcription Factor Family AT1G66370 59.722 1.41e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g2211 Myb_DNA-binding 3.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1630 9 18740929 18742033 Lal1g2211 1 24059765 24061313 LSH