Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2200 ATGGATGAACAAGGTCAATATAAGATGTGCACCAAAAGAAAATACTCAATGAGTTCTAACCATACTTCTTCTTCACCAACTAATAATGATTACCCATCTTCCTATGATGACTCATCATGGGAAGAACAAGCTTTTGCAAAAGATGCAGCTGGGTTTGGTTGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCATATGAATGTTCATAGAAGGGATAGAGCAAGACTAAATCAGCAACCATCTAGCCCAAAACAAAATGAAATTCTGAATCATCAAGTTCAAAACCCTTTAACCTCAGGTTACCTATACCCATCTTCTCTTTTTGGATTGGCCAATACAAACAACACTAACCCTAATTCTTCTGATCCTCTTCATGATCTCGCTTCATCTTCTAAGACATATCCTGCTCTTTCTTCTAAATCCTTGTCAAATCTTGCTGAATCTGGTGTTGACAGAATCTCTAAGGGATGGGATAATGATAACACTGATGTGGCTGTGAGCTTGAACTTGAACTTTGTGTGTAGAGCTTACACACCTGTGCAGTTTGAGACTAAAGAAGAAGATTTAATAAGTTTCAAGAAGAAGAGAAAGGATGCATCAATTTCATTCTTCCCAAAATCAGGTTCAGTTGAAACACATGATAAGCAGTCACAAATGTTTGAATTTAGCCCTAACTCCATAGAAGAGCTGGATCTGGAGCTAAGGCTTGGATACAGGTCCAAGGCAAATCGGAAGCGATTGTTGCGCAGCGTTGACCACAAGCAATCAAATAAAGTGTATAGAATAAATAGAAGAGAAGAAACAAGAGACTTTGATAACGAAGTTCAGCCTATTGTGTCTACATTCCGAGAGCGTTTAACGACTAACAAGATAATAAGGATTACAAGCTCTACCACACTTATGGGTCGAAGTGCTCATGAAGTATTTCTATTTGGTGCACATAATAACAATAGACTTGAGTTCAATATATAA 1014 0.3836 MDEQGQYKMCTKRKYSMSSNHTSSSPTNNDYPSSYDDSSWEEQAFAKDAAGFGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLNQQPSSPKQNEILNHQVQNPLTSGYLYPSSLFGLANTNNTNPNSSDPLHDLASSSKTYPALSSKSLSNLAESGVDRISKGWDNDNTDVAVSLNLNFVCRAYTPVQFETKEEDLISFKKKRKDASISFFPKSGSVETHDKQSQMFEFSPNSIEELDLELRLGYRSKANRKRLLRSVDHKQSNKVYRINRREETRDFDNEVQPIVSTFRERLTTNKIIRITSSTTLMGRSAHEVFLFGAHNNNRLEFNI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2200 337 Pfam C2H2-type zinc finger 61 85 - -
Lal1g2200 337 Gene3D Classic Zinc Finger 58 111 - -
Lal1g2200 337 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lal1g2200 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lal1g2200 337 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 3 158 - -
Lal1g2200 337 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 146 255 - -
Lal1g2200 337 MobiDBLite consensus disorder prediction 1 37 - -
Lal1g2200 337 MobiDBLite consensus disorder prediction 11 37 - -
Lal1g2200 337 PANTHER OS07G0101800 PROTEIN 3 158 - -
Lal1g2200 337 PANTHER OS07G0101800 PROTEIN 146 255 - -
Lal1g2200 337 SMART c2h2final6 61 83 IPR013087 -
Lal1g2200 337 SUPERFAMILY beta-beta-alpha zinc fingers 58 88 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2200 Lal-Chr1 23972793 23975728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2200 32 251 C2H2 Transcription Factor Family AT5G06070 35.652 1.81e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g2200 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2200 - - gsj:114396020 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2200 1 23972793 23975728 Lal6g0271 6 1772801 1774065 ECH
Lal1g2200 1 23972793 23975728 Lal18g1339 18 15840555 15841379 ECH
Lal1g2200 1 23972793 23975728 Lal1g2200 1 23972793 23975728 ECH
Lal9g1608 9 18391955 18392767 Lal1g2200 1 23972793 23975728 LSH