Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2198 ATGGCCAAACTTCTTCAACTTTTCTCTATCCTACTATTACTTATGATCCCATTTTCATCTCAGATTGACCAACTTTTCTATGCTGGATTCAAGAACATAGGTGCCAACAACAATCTAACCTTGAATGGAGTAGCAGAAATTGAGAAAAATGGTATTTTGAGATTAACATATGATACTAGCAGATTAATAGGACATGCTTTTTATCCAACACCTTTTCAGTTCAAGAACTCAACTATAGGTAAAGTTTTTTCCTTTAGTGCTTCATTTGCTCTTGCTATTGTTCCTGAGTATCCAAAACTTGGTGGGCATGGCCTTGCTTTTACTATAGCACCTTCTAAGGATCTTAAAGCTTTACCTAGTCAATATCTTGGTCTTCTTAATTCAACTGATATTGGTAACTCTTCTAATCATCTTTTTGCTGTTGAGTTTGATACTGTTCAAGACTTTGAGTTTGGTGATATCAATGATAACCATGTTGGAATTGATATCAATAGTTTGCAGTCAAATGCATCTACTACTGCAGCTTATTACACTGATGATTCAACCAAACAAAATCTCACACTGAAAAGTGGGAAAACTATACTAGCTTGGGTTGATTATGATTCTTCACAAAGCCTTATTAGTGTTACTATTTCACCTACTTCTTCCAAACCCAAAAAACCAATCTTGTCCTTTGTTATGGATCTCTCACCAATATTTCATGATGCTATGTATGTTGGGTTTTCTGCATCAACTGGTTTACTTGCTAGCTCTCATTACATCATGGGTTGGAGCTTTAAAATAAATGGACAAGCACCAACACTTGATCTTTCTTCTCTGCCAAAACTTCCAGGACCAAAGAAGAAGCAAACTCCTATGATTATAGGGGTTTCTGTCTCAGTTTCTGTCATTGCATTATGTGTTGTATTCATTGGGATTTACCTATTCTGGAAAGTAAAGAATGCTGATGTTATAGAACCATGGGAGCTTGTAATTGGGCCACATAGGTACTCATATCAAGAGCTCAAGAAAGCTACAAGAGGTTTCAAGGACAAGGAGTTACTTGGGCAAGGTGGGTTTGGCAAAGTTTTCAAAGGAACATTGCCTAATTCAAAGACTGAAGTTGCTGTTAAGAGAGTTTCACATGAGTCAAAACAAGGCCTTAGGGAATTTGTATCCGAAATCGCCAGCATAGGCCGGCTTCGCCACAGGAATTTGGTTCAGTTATTGGGATGGTGTCGCCGCCGTGGCGACCTCTTACTCGTATACGATTTCATGGCCAACGGGAGCTTAGACAAGTACTTGTTTGATGACCCTAAGATTGTGCTAAGTTGGGAACAAAGATTCAAGATAATCAAAGATGTTGCTTCAGCACTATTGTACCTACATGAAGGGTATGAACAAGTGGTTATTCATAGAGATGTTAAGGCTAGCAATGTGTTACTAGACTTTGAACTCAATGGAAGACTAGGTGATTTTGGATTAGCAAGGTTATATGAACATGGTGCTAATCCAAGCACCACAAGGGTAGTTGGTACTTTAGGCTATTTAGCACCAGAGTTACCTAGAACAGGAAGAGCAACAACAGGGTCAGATGTTTTTGCATTTGGTGCACTTTTGCTTGAAGTAGCATGTGGGAGAAGGCCAATTGAGCCAAAAGCATTACAAGAAGAGTTGGTTTTGGTGGATTTGATATGGGAAAGGTACAAAGAAGGTAGAATACTTGATGTGGTTGATCCAAAACTACATGGTATTTTTGATGAAAATGAGGTTTTGGTTGTGATAAAACTAGGAATGATATGTTCAAATGATGATCCTAATGTTAGGCCTAACATGAGACAAGTAATGAGGTATTTGGATGGAGAACTTGAGATTCCACATGAGTTTAGAAAACCAGGTGATGTAGCTCATCATGAAGGATTTGATGAGTTTTTGCATTCACTTGCATCATCATCTTTTGATAACATGAGTTCAGGATCATATTTTGGTAATAGAGAAATGGATAATAGTTTTCCTTCTTTTGTTAATTCACCTCATTCACTTCTCCATAACAATAGAGGACAAACAAGGACAAGGTGA 2058 0.378 MAKLLQLFSILLLLMIPFSSQIDQLFYAGFKNIGANNNLTLNGVAEIEKNGILRLTYDTSRLIGHAFYPTPFQFKNSTIGKVFSFSASFALAIVPEYPKLGGHGLAFTIAPSKDLKALPSQYLGLLNSTDIGNSSNHLFAVEFDTVQDFEFGDINDNHVGIDINSLQSNASTTAAYYTDDSTKQNLTLKSGKTILAWVDYDSSQSLISVTISPTSSKPKKPILSFVMDLSPIFHDAMYVGFSASTGLLASSHYIMGWSFKINGQAPTLDLSSLPKLPGPKKKQTPMIIGVSVSVSVIALCVVFIGIYLFWKVKNADVIEPWELVIGPHRYSYQELKKATRGFKDKELLGQGGFGKVFKGTLPNSKTEVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDDPKIVLSWEQRFKIIKDVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGRATTGSDVFAFGALLLEVACGRRPIEPKALQEELVLVDLIWERYKEGRILDVVDPKLHGIFDENEVLVVIKLGMICSNDDPNVRPNMRQVMRYLDGELEIPHEFRKPGDVAHHEGFDEFLHSLASSSFDNMSSGSYFGNREMDNSFPSFVNSPHSLLHNNRGQTRTR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2198 685 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Lal1g2198 685 Pfam Protein kinase domain 342 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2198 685 PANTHER - 7 663 - -
Lal1g2198 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Lal1g2198 685 CDD lectin_legume_LecRK_Arcelin_ConA 27 263 IPR001220 GO:0030246
Lal1g2198 685 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 7 663 - -
Lal1g2198 685 Gene3D Transferase(Phosphotransferase) domain 1 419 627 - -
Lal1g2198 685 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Lal1g2198 685 Gene3D - 25 264 - -
Lal1g2198 685 SUPERFAMILY Protein kinase-like (PK-like) 323 635 IPR011009 -
Lal1g2198 685 CDD STKc_IRAK 348 614 - -
Lal1g2198 685 SMART serkin_6 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2198 685 Pfam Legume lectin domain 26 274 IPR001220 GO:0030246
Lal1g2198 685 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 281 IPR013320 -
Lal1g2198 685 ProSiteProfiles Protein kinase domain profile. 342 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2198 Lal-Chr1 23960285 23962342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2198 19 625 Receptor kinase-like Gene Family AT3G55550 62.052 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lal1g2198 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2198 - - gmx:100784346 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2198 1 23960285 23962342 Lal5g1170 5 14421353 14424637 ECH
Lal1g2198 1 23960285 23962342 Lal1g2198 1 23960285 23962342 ECH
Lal9g1607 9 18379329 18381347 Lal1g2198 1 23960285 23962342 LSH