Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2188 ATGATGTTGAATCATGTTGATGTTGTTGATGATATGCTTTATGAACAACTATGGAAAGCATGTGCAGGACCCCATGTTGATGTTCCTCATGTTGGCCAAAGGGTTTTTTATTTTCCTCAAGGACACATGGAACAATTAGAAGCATCAACAAATGAGGAATTAAATCAGAGGATTCCATTGTTCAATCTTCCAACCAAGATCCTTTGTCGTGTCATCAATGTCAATTTATTGGCTGAATCAGAAACAGATGAAGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCTACAAACCCTGATCCATACCCTGCTGAAGTTCCAAGGCCAACAATTCATTCATTCAATAAGGTCTTAACTGCTTCTGATACAAGCACCCATGGTGGCTTCTCCGTTCTTAGGAAACACGCCACCGAATGCCTTCCGGCTTTGGACATGTCCCAGTCAACCCCAACTCAGGAATTGGTTGCTAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCTCGTCGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCAGGAGATACCTTTGTGTTTCTGAGAGCGGACAATGGAGAATTGCGTGTCGGAGTGAAGCGTCTTGCTCCTCAACAGAGCAGCATGCCATCATCGGTGATCTCCAGTCAGAGCATGCACTTAGGAGTTCTTGCAACTGCATCTCATGCTGTTGCAACTCAGACTCTTTTCTTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATTAGTGTGAACAAATATTTGGAGGCTGTCAATCATAAATTTGATGTTGGTTTGAGGTTCAAAATGAGATTTGAAGGAGACGATTCTCCCGAGTCTGACAAAAGATTTTCAGGCACAATAGTTGGAGTAGAAGATATTTCTCCCCAATGGATAAATTCAACGTGGCGATCGCTTAAGGTTCAATGGGATGAATCTGCATCTGTTCCAAGACCAGATAGGATTTCACCTTGGGAGATTGATCCTCTTCTGGCTTCTGTTCATGCACCTTCTGCTCAACCGGCTGTTGTAAAGAATAAAAGGCCTCGACCACCCAGTGAAATTCCGGATATTGACACAACAGCAGCTGCCTCAGCTTTCTGGAATGCTGGGATGACACCGTCGAATCTACAACTTAGTGTCATGTGTGAAAGCAAAAGGAGTGAGAATAACCATATGTGGCATCATAATAAGATTGATAATAGTAAAAGCGGCTGCATTGCTATTTCAAGGAATCAAGTAGATGGAAGTTGGCTATCTTCTCCTCATTCTAGTGTTCCTTCTCATTTATTTCACGACACGACCGACGACAGCAAGAGTGTATCAGCTTGGCCTAATTCAAAAACTCATTCAGAAAAACTGAGTAATGATAACTTCCGCGATCAAGTTGATAAGGAGAACAAAGTAGAGGGTGCTACAAGCTGTAGATTGTTTGGAATTGAGCTTATTGGTCATACTAGGAACTCTCCTGCTATAGATGGAGCATCTATACATGCAGAAAATGCATTCGGTGTCTCGAACGAGGGATGTGTTAGCACCTTGTCCAAAACTGATGCAGATCATAATTCCGATCTCTCAAAGGCATCTGAAGAGAGGAACCAAGAACAGTTGCAAGTGTCGCCGAAAGAGAATCAAAGCAAGCAAATATGTAGCAGAAGTTGCACCAAGGGTGTTTGTGTTCAAAAGGTTCAAATGCAGGGTATTGCAGTCGGCCGTGCCGTGGACTTGACCATGTTGGACGGGTATGATCAACTTATAGATGAATTAGAGAAAATGTTTGACATAAAGGGACAGCTTCAACTCAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTCGGTGATGATCCGTGGCCTGAGTTCTGTAATATGGTGAAAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAAATGAGTTCTGGAAGCAAACTGCCTCTATCTTATTCAACAGAAGATGAAATTGTATTAAGCTCAGACACAACTGAGACCTGA 2067 0.4238 MMLNHVDVVDDMLYEQLWKACAGPHVDVPHVGQRVFYFPQGHMEQLEASTNEELNQRIPLFNLPTKILCRVINVNLLAESETDEVYAQITLVPESNQAEPTNPDPYPAEVPRPTIHSFNKVLTASDTSTHGGFSVLRKHATECLPALDMSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRADNGELRVGVKRLAPQQSSMPSSVISSQSMHLGVLATASHAVATQTLFLVYYKPRTSQFIISVNKYLEAVNHKFDVGLRFKMRFEGDDSPESDKRFSGTIVGVEDISPQWINSTWRSLKVQWDESASVPRPDRISPWEIDPLLASVHAPSAQPAVVKNKRPRPPSEIPDIDTTAAASAFWNAGMTPSNLQLSVMCESKRSENNHMWHHNKIDNSKSGCIAISRNQVDGSWLSSPHSSVPSHLFHDTTDDSKSVSAWPNSKTHSEKLSNDNFRDQVDKENKVEGATSCRLFGIELIGHTRNSPAIDGASIHAENAFGVSNEGCVSTLSKTDADHNSDLSKASEERNQEQLQVSPKENQSKQICSRSCTKGVCVQKVQMQGIAVGRAVDLTMLDGYDQLIDELEKMFDIKGQLQLRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVKKMSSGSKLPLSYSTEDEIVLSSDTTET 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2188 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal1g2188 688 Gene3D - 115 219 IPR015300 -
Lal1g2188 688 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Lal1g2188 688 Pfam Auxin response factor 244 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal1g2188 688 SMART B3_2 118 220 IPR003340 GO:0003677
Lal1g2188 688 MobiDBLite consensus disorder prediction 532 562 - -
Lal1g2188 688 MobiDBLite consensus disorder prediction 455 470 - -
Lal1g2188 688 SUPERFAMILY CAD & PB1 domains 578 652 - -
Lal1g2188 688 Gene3D - 573 664 - -
Lal1g2188 688 MobiDBLite consensus disorder prediction 436 471 - -
Lal1g2188 688 Gene3D - 279 353 - -
Lal1g2188 688 SUPERFAMILY DNA-binding pseudobarrel domain 109 247 IPR015300 -
Lal1g2188 688 Pfam B3 DNA binding domain 118 217 IPR003340 GO:0003677
Lal1g2188 688 ProSiteProfiles PB1 domain profile. 576 657 IPR000270 GO:0005515
Lal1g2188 688 Pfam AUX/IAA family 554 612 IPR033389 -
Lal1g2188 688 Pfam AUX/IAA family 622 660 IPR033389 -
Lal1g2188 688 PANTHER AUXIN RESPONSE FACTOR 7 676 - -
Lal1g2188 688 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2188 Lal-Chr1 23927831 23932048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2188 11 669 B3 DNA Binding Superfamily AT4G23980 56.652 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal1g2188 AUX_IAA 1.7e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2188 K14486 - gmx:100779003 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1851 2 20841307 20845546 Lal1g2188 1 23927831 23932048 LSH