Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2186 ATGGACCTGTTAACTAGTGTAACACCACCAAGAGGAGTTACTTTCCTAAGAAGAAATGCTTCAAAAGAGAGAAGTGACTCTTTCTATAAGGGACCTGAAACATGGAAAGATGATGATTCTTTATTGACTAAACCTCTTGTTTCTGAAACAATGTCATTCAAAGAAGAGGAACCTACCTCAAAGAAGCAATGTTCATTTGCACAATCAGTCATTAATGGAATCAATATGATATGTGGGGTAGGAATACTCACAATACCATATGCTGTAAAAGAAGGAGGATGGTTGAGCCTTATTATACTTGTAGTATTTTCTATAGTTTGCTGTTATACTGGGATATTATTGAAGAGGTGTTTGGAAAATTACCCTGAACTCAAAACCTTCCCAGACATCAGCCAGGCCGCATTCGGAGTTTCTGGTCGGTTATGTATCGCGATTACTTTGTTCATGGAACTGTATGCTTCTTGTGTTGAGTATATAACACTAATGAGTGATAACCTCTCATCAATATTTCCTAATGCGAATGTGACATTCGGCGGCGCTGACATTGGCACTCATCAAGTTTTTGCAATCACGGCCGCGATTCTTGTTCTTCCAACAGTTTGGATAAAAAATCTAAGCTTGCTTTCATATGTTTCAGTTTATGTGCTAACAAAAGTTACCTTTGTGCTCAGTTGGAGGATATTTACAACAATTTTGGTCACACTATGCTTGTTTTGGGTTGGAATAGTAGATCAAGTTGGATATAAGCCAGGAGCAAAAATTTTTGATCTGGCAAACGTCTCTGTCGCAATCGGTATCTATGGTTTTGGCTTCGGTGGCCATGCAGTTTTTCCTAGTATCTACTCTTCCATGAAGGAACCATCACAATTCCAACCAGTTCTATATATCAGCTTTGCCTTTTGTCTTGCTATGTACACAGGAGTGGCTGCAATGGGCTATTTAACATTCGGCGATGCGGTCGAATCTCAATTTACCTTAAACATGCCTAAAGAATTATATGCATCCAAGGTTGCAACCTGGACAACTGTAAGAAACCAAAACTTTGCAGGCTCTAAGGAAGAACATAAGAATGAACTTGCCCCTACTCCTAAGTTAAGATGTCATGCTATGTCTGTTGTTGTCAGAACAGTTCTAGTGATTACAAGTTTAGTTGTTGCACTCTGTGTTCCATATTTTGGTTCTTTGATGGCATTGATTGGTTCTTTCATGACTATGCTAATGGCACTTATTTATCCTTGTGCATGTTATCTCAAACTATATAGTGGCAAATTATCAAAAGTACAGATAACAATTTGCATTTTGATTATTATTGTTGGTGTAGTAGGAGCTTGTGCTGGAACATATTCAGCAATGTCAAAAATAATCAATGGAGAGAACTAA 1380 0.3797 MDLLTSVTPPRGVTFLRRNASKERSDSFYKGPETWKDDDSLLTKPLVSETMSFKEEEPTSKKQCSFAQSVINGINMICGVGILTIPYAVKEGGWLSLIILVVFSIVCCYTGILLKRCLENYPELKTFPDISQAAFGVSGRLCIAITLFMELYASCVEYITLMSDNLSSIFPNANVTFGGADIGTHQVFAITAAILVLPTVWIKNLSLLSYVSVYVLTKVTFVLSWRIFTTILVTLCLFWVGIVDQVGYKPGAKIFDLANVSVAIGIYGFGFGGHAVFPSIYSSMKEPSQFQPVLYISFAFCLAMYTGVAAMGYLTFGDAVESQFTLNMPKELYASKVATWTTVRNQNFAGSKEEHKNELAPTPKLRCHAMSVVVRTVLVITSLVVALCVPYFGSLMALIGSFMTMLMALIYPCACYLKLYSGKLSKVQITICILIIIVGVVGACAGTYSAMSKIINGEN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2186 459 Pfam Transmembrane amino acid transporter protein 64 332 IPR013057 -
Lal1g2186 459 Pfam Transmembrane amino acid transporter protein 355 450 IPR013057 -
Lal1g2186 459 PANTHER AMINO ACID TRANSPORTER AVT1F-RELATED 34 456 - -
Lal1g2186 459 PANTHER OS05G0424000 PROTEIN-RELATED 34 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2186 Lal-Chr1 23889674 23892832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2186 1 456 Amino Acid or Auxin Permease AAAP Family AT5G02180 48.340 1.11e-157 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2186 K15015 - qsu:112025453 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1850 2 20810104 20820023 Lal1g2186 1 23889674 23892832 LSH