Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2174 ATGGAGTTAGAAGGTGTGGATCTGCATGCATCAGGAGTAGTGGTTAATGAGAATAATGATAATAATAACCACCACCTTGTTGTTGGATTTGAAGAAACTATGGCTGTTGCTGAGAGAGATATATGGCTAAATGGTAATGATGAAGATGAGCTTCTTGGTGTGAATGACCCTTCTATGTTTTATGCTGATTTTCCTCCTCTCCCCGATTTCCCATGCATGTCTTCATCTTCTTCTTCTTCATCAACTCCAGCACTTCCTGTTAACACCACAAATTGCACCACCACCACCACCACAACCAGAACCACCTCCTCTTCTTCGTCGTCTTCCGCCGCCTCTTGGGCTGTTTTGAGATCAGATTTTGAGGAGAATCTTGAACAGAATAACTACAATTGTTGCATGCAGAATGAACATCAGCAACAGCATGATCATCATCATCATCAGAATGATGTATATGATATAGGACCTGCAGCTTTGTCCTCAAATGCCTCTATGGAGGTTTCTCAACAGCACCATTACCTTAACCACCAACAACAAAACCATGATCCTTGTCTTGATGGTACTGTTGGAGATTGCATGGATGAAGTGATGGATTTTGGATACATGGAGCTTTTTGAGGGGAATGAATTCTTTGACCCAGCATCTATTTTCCAAAGTGAAGAAAACCCTTTAGTGGAATTCACACAGGTTCAGACTGTGCCACAACAAGAGGAACATCAACATCAACATGCAATGTTACCACATCATTATCAGGAATCTACACTACTACAACATCAAGGGATGACAAATGAAGAAGATAATGATCATCATAATCAGGCTCTTATGTGTGCCAATACTACCACCAATAACAATATAGAGATCATACAATGTGAAGCTGATGCAACTGGTCCTGATGTAGATGATGAAATGAGCAGTGTTTTCTTGGAGTGGCTTAAGTCTAACAAGGATAGTGTCTCTGCTAATGATTTGAGAAGTGTGAAGCTGAAAAAGGCAACAATAGAAAGTGCTGCAAAACGTTTAGGTGGAGGTAAAGAAGCCATGAAACAATTGTTGAAGCTTATTCTTGAGTGGGTTCAAACTAGTCATCTTCAGAATAAAAGGCGCAAGGAGATTAATGATTCAGATCTACTCACACAATTTCAGGATCCTATTCAAAGCCAAAACAGAAAAAACACTAGTTCCAATCTGCATGTTGCACCTGATCAATCAAACACATGTTTCAACCAAACACCTTGGGTATCTTTGTCTCAACAAAATTATGGAACAACAACAGATCAAGCTCCTCTTATGACAGCGCCTCAACCATTTTCACAACAAATGGTTGGTGTTTATGTGGGTGATCCTTACACAAATGGTGCTGCTGCTTCAAATAATCATAACCCTTATCAACCTAGTGCTGAATATCAAATGCTGGAATCAACACCTTCATGGCCTCCTACTCAGTTCACTACTGTTGCTAATTCTCAATATAATCAGTCATTCGGGGACAACAATCTTCACCCTCAAATGCCGGCTGTGGCAGCGGCATTTGGTGGCGGCTATGGGAATCAATACCCTTATCAGTTTTTTCATCATGGCCCTGGTGGTGATAGGTTGATGAGGTTAGGGCCATCGGCGACAAGAGAAGCGAGGAAGAAGAGGATGGCAAGGCAGAGAAAGCTGTTGTCTCATCACAGGCACAACAATCAAAACCAGAATCAAGCCTTGGATCCACATGCAAGATTGGGAAGTGATAATTGTACCACTTTGTTAGCCCCTGCTCATGCAAATCAAGCCAATTGGGTCTATTGGCAGACTATGACTGGTGGGGCAGCTCCTATGGTACCGGTCGTTCCGGTTGAGCCGCCAGCGGTACAACAGGTGGTTGATCGGACCACCATGCAAAACCAGAATACACAGAATTATCATCAAGGCCGAGTCTCATCGGATAAGCGACAACAGGGTTGGAAACCTGAGAAGAACTTGAAGTTTCTTCTGCAAAAGGTGTTGAAGCAAAGTGATGTGGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAAGCAGAAACACATTTGCCAGAACTTGAAGCAAGAGATGGAATTTCTATAACAATGGAAGATATTGGTACTTCTAGAGTTTGGAACATGCGTTATAGATACTGGCCAAACAACAAAAGCAGGATGTATTTGCTTGAGAACACTGGGGACTTTGTGAGAGCTAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTAAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAACAAGGGATGAAAGCAGAAACAAAGAAAGGAGGAAAGATGAATAAAAACCAGCAACATGGGAATAATGCTACAGCTACACCTGTTGCTGTTTCTGTTGCTGCTATTAATAATGGCACTTCATCTTCACCTAAGCAGAAAAATGAAAAGCTAGCAAGATAA 2442 0.4161 MELEGVDLHASGVVVNENNDNNNHHLVVGFEETMAVAERDIWLNGNDEDELLGVNDPSMFYADFPPLPDFPCMSSSSSSSSTPALPVNTTNCTTTTTTTRTTSSSSSSSAASWAVLRSDFEENLEQNNYNCCMQNEHQQQHDHHHHQNDVYDIGPAALSSNASMEVSQQHHYLNHQQQNHDPCLDGTVGDCMDEVMDFGYMELFEGNEFFDPASIFQSEENPLVEFTQVQTVPQQEEHQHQHAMLPHHYQESTLLQHQGMTNEEDNDHHNQALMCANTTTNNNIEIIQCEADATGPDVDDEMSSVFLEWLKSNKDSVSANDLRSVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKEINDSDLLTQFQDPIQSQNRKNTSSNLHVAPDQSNTCFNQTPWVSLSQQNYGTTTDQAPLMTAPQPFSQQMVGVYVGDPYTNGAAASNNHNPYQPSAEYQMLESTPSWPPTQFTTVANSQYNQSFGDNNLHPQMPAVAAAFGGGYGNQYPYQFFHHGPGGDRLMRLGPSATREARKKRMARQRKLLSHHRHNNQNQNQALDPHARLGSDNCTTLLAPAHANQANWVYWQTMTGGAAPMVPVVPVEPPAVQQVVDRTTMQNQNTQNYHQGRVSSDKRQQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGMKAETKKGGKMNKNQQHGNNATATPVAVSVAAINNGTSSSPKQKNEKLAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2174 813 SMART B3_2 658 758 IPR003340 GO:0003677
Lal1g2174 813 Gene3D - 654 773 IPR015300 -
Lal1g2174 813 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 803 - -
Lal1g2174 813 ProSiteProfiles B3 DNA-binding domain profile. 658 760 IPR003340 GO:0003677
Lal1g2174 813 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 803 IPR044800 GO:0003700
Lal1g2174 813 SUPERFAMILY DNA-binding pseudobarrel domain 657 754 IPR015300 -
Lal1g2174 813 MobiDBLite consensus disorder prediction 765 813 - -
Lal1g2174 813 Pfam B3 DNA binding domain 659 755 IPR003340 GO:0003677
Lal1g2174 813 MobiDBLite consensus disorder prediction 75 106 - -
Lal1g2174 813 MobiDBLite consensus disorder prediction 775 813 - -
Lal1g2174 813 MobiDBLite consensus disorder prediction 553 573 - -
Lal1g2174 813 CDD BfiI_C_EcoRII_N_B3 656 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2174 Lal-Chr1 23749624 23753399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2174 20 793 B3 DNA Binding Superfamily AT3G24650 43.902 4.51e-155 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal1g2174 B3 3.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2174 - - lang:109363285 1432.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2174 1 23749624 23753399 Lal1g2174 1 23749624 23753399 ECH
Lal2g1807 2 20296826 20301128 Lal1g2174 1 23749624 23753399 LSH