Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2172 ATGTCTGGCCACAGAAGCTCAAGAGGTTCAAAGTTCACAGATCAGAATGAGATTAATGAACTTGTGTCAAGGTTACAAGTACTACTGCCACAACTGAACCAAAGAAACAACTCCAGGCAATCAGTGTCTAAGATCTTGCAGGAAACATGCAGTCACATTAAGAACTTGCAGAAAGAGGTGGAAGCCCTAAGTGAAAAGCTAACAAAGTTGATGGATTCTATGGATATTAGTGATATAGAGAGAAGAGCTTTAGAAGACTTTCTCCAACCATAA 273 0.3956 MSGHRSSRGSKFTDQNEINELVSRLQVLLPQLNQRNNSRQSVSKILQETCSHIKNLQKEVEALSEKLTKLMDSMDISDIERRALEDFLQP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2172 90 Gene3D - 15 86 IPR036638 GO:0046983
Lal1g2172 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 56 IPR011598 GO:0046983
Lal1g2172 90 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Lal1g2172 90 Coils Coil 46 73 - -
Lal1g2172 90 PANTHER DNA BINDING PROTEIN 1 89 - -
Lal1g2172 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 75 IPR036638 GO:0046983
Lal1g2172 90 Pfam Helix-loop-helix DNA-binding domain 16 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2172 Lal-Chr1 23742011 23743177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2172 2 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 49.333 2.15e-16 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g2172 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2172 - - rcu:112536377 100.138