Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2157 ATGATGTCTCAGGATTCGGGTGAATGGGATGCTGACAAAATGCTTGACTTTTATATTCATGATTATCTTGTGAGAAATAAATTACATGCCTCAGCAGAATCTTTTATGACAGAAGCAAACCTTCCTGATCATAAAGCAGAAATGAAGAATGCACCGGATGGATTTCTTTACGAGTGGTGGTCCGTCTTTTGGGATTTATCCCTTAAAAAGATGCGTAAAAATTGCTCTGACTCTGCCTCGGCTTACATAGAGGCCCAGATAGCGAAGGTGAGAGAACATCGACTTCGAATGCAACAATTGCTAGTAATGCAGCACGGCAGTGCACAAGTACTAGGTGGTTCCTTAAATGGCATGAACTCTAAGGGAATGATGGGGCCTCCAGAAGCAAGTGTGTCAGCGACGGAAATGTTCGAAGAACAACGAATGAAACACTTCAATTCAATGGGTTCGGAGGCATCTTTAACTCCTATGCATACCTATAATATGGCCTTTCCCAAATCGGCAACAACTCATCACATCCATCTCGATAGTGATCATTCGAGACGTGTGTCTAGTTCACCGCAGCAAATTCAGGCACAGTCTTTGTGGACTAATGGCATCGAACGAGAACTTAACTTGGGAGTCACTCCAACGGGGTTGCCTATGGATCCTTCAGTTTTTGAACAAACAATGTTACAAGTAAATTCTGGGCTAAGCGATGCAGGATTATATGAAGGAAATACAAGTGTTCCACTAAAGGGCTTGCCTCTCAATATGAATATGAACCAGGCACAACATTCATTACCTCAACTGCAGGAGCAATTGCAGCAGAACGACCGAAAAAGACAACAACCTTCTTCTCCTGAAGCTGCCAATAGCACTATTGGTGGGAACAATGTGGAAAAAGGCATGATGATGGATGGTATAAATGGAACACAAGGCCTTGCATCATCTTCAAATTTGCTGGAGAACATAGAACAGTATGAACAGGTTGGTAATAAAGGTGATAACATTGAGTCGTTTCAATCGGGCGATGGAGGAGATGGTGGGAAAGCCTATGGAACAATAAACCAAACTCTGGCTAATCAAAATATAGAGGCTTCAAAAGGTTTCACCTTTACTGAATTTAAATGCATAAGAATGACAAACAGCAAAGTTACTTGCTGTGACTTTTCTTCTGATGAAAAGTTTCTTGCCAGTGCTGGAGATGACAAGAAGGTTGTCCTATGGAATATGGACACTTTGAAGACAGAGAACACTCCTGAGGAACACAAATCAGTTATTTCAGATGTCCGCTTTAGACCGAATTCTTCTGTGTTTGTGACATCCTGTATCGATAATTGTGTGCGGTTATGGGATGCAGCTAATCCAAGATATTGTCTGGAAGAATATAGTGTGCACAGTTCGGCCGTTATGTCAGTCGATTTCCACCCGAAGCAAACTGATCTTCTCTGCGTCTCGGACAGTAAAAATGAAATTCAGTACTGGAACATTACTACATCCTCCTTCATCAATTCCTTTAAGGGAGGTAATGCAAAAGTGAGGTTTCAGCCCGGAGTAGGACAGGTATTAGCAGCAGCTTATGATAACGGAGTATCGATATTTGATGCCGAAACCAGCACACACATTTACTCACTCCAGGGTCATCCTGAAGCAGTAAGCTATATTTGCTGGGATGCAAATGGAAAGACCTTGGCATCTATGAGTCCTAATTTGGTGAAGATTTGGTCGCTGAACTCGGGAGAATGCGTTCGAGAGTACAGCAGCTCCAGTGAGAATCAGTTTCATTCCTGTGTTTTTCATCCAAAAAATTCAACTATATTGGTGATTGGAGGGAATTCATACTTAGAGCTATGGAACATAGATAAGAACAGAACATTACCAATTCTTGCACACAAGGATATAATATCTTCTTTGGTTCATTCTCCTGTCACTGGAATTGTTGCCTCTGCAAGCCATGATGGATTTGTGAAGTTGTGGAAATAA 1965 0.4178 MMSQDSGEWDADKMLDFYIHDYLVRNKLHASAESFMTEANLPDHKAEMKNAPDGFLYEWWSVFWDLSLKKMRKNCSDSASAYIEAQIAKVREHRLRMQQLLVMQHGSAQVLGGSLNGMNSKGMMGPPEASVSATEMFEEQRMKHFNSMGSEASLTPMHTYNMAFPKSATTHHIHLDSDHSRRVSSSPQQIQAQSLWTNGIERELNLGVTPTGLPMDPSVFEQTMLQVNSGLSDAGLYEGNTSVPLKGLPLNMNMNQAQHSLPQLQEQLQQNDRKRQQPSSPEAANSTIGGNNVEKGMMMDGINGTQGLASSSNLLENIEQYEQVGNKGDNIESFQSGDGGDGGKAYGTINQTLANQNIEASKGFTFTEFKCIRMTNSKVTCCDFSSDEKFLASAGDDKKVVLWNMDTLKTENTPEEHKSVISDVRFRPNSSVFVTSCIDNCVRLWDAANPRYCLEEYSVHSSAVMSVDFHPKQTDLLCVSDSKNEIQYWNITTSSFINSFKGGNAKVRFQPGVGQVLAAAYDNGVSIFDAETSTHIYSLQGHPEAVSYICWDANGKTLASMSPNLVKIWSLNSGECVREYSSSSENQFHSCVFHPKNSTILVIGGNSYLELWNIDKNRTLPILAHKDIISSLVHSPVTGIVASASHDGFVKLWK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2157 654 Coils Coil 254 274 - -
Lal1g2157 654 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Lal1g2157 654 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 446 IPR001680 GO:0005515
Lal1g2157 654 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 253 654 IPR044716 GO:0003714
Lal1g2157 654 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 251 IPR044716 GO:0003714
Lal1g2157 654 SMART Lish 11 43 IPR006594 GO:0005515
Lal1g2157 654 CDD WD40 376 654 - -
Lal1g2157 654 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 413 IPR001680 GO:0005515
Lal1g2157 654 Pfam LisH 13 39 IPR006594 GO:0005515
Lal1g2157 654 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 654 IPR001680 GO:0005515
Lal1g2157 654 SMART WD40_4 573 613 IPR001680 GO:0005515
Lal1g2157 654 SMART WD40_4 450 490 IPR001680 GO:0005515
Lal1g2157 654 SMART WD40_4 532 570 IPR001680 GO:0005515
Lal1g2157 654 SMART WD40_4 365 404 IPR001680 GO:0005515
Lal1g2157 654 SMART WD40_4 493 529 IPR001680 GO:0005515
Lal1g2157 654 SMART WD40_4 615 654 IPR001680 GO:0005515
Lal1g2157 654 SMART WD40_4 407 446 IPR001680 GO:0005515
Lal1g2157 654 Gene3D - 507 654 IPR015943 GO:0005515
Lal1g2157 654 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 407 - -
Lal1g2157 654 ProSitePatterns Trp-Asp (WD) repeats signature. 391 405 IPR019775 -
Lal1g2157 654 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Lal1g2157 654 MobiDBLite consensus disorder prediction 266 291 - -
Lal1g2157 654 Gene3D - 367 506 IPR015943 GO:0005515
Lal1g2157 654 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 253 654 - -
Lal1g2157 654 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 8 251 - -
Lal1g2157 654 Pfam WD domain, G-beta repeat 633 654 IPR001680 GO:0005515
Lal1g2157 654 Pfam WD domain, G-beta repeat 376 404 IPR001680 GO:0005515
Lal1g2157 654 Pfam WD domain, G-beta repeat 413 446 IPR001680 GO:0005515
Lal1g2157 654 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 446 - -
Lal1g2157 654 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 499 IPR001680 GO:0005515
Lal1g2157 654 SUPERFAMILY WD40 repeat-like 356 654 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2157 Lal-Chr1 23637090 23642242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2157 452 653 Miscellaneous Gene Families AT5G08390 25.121 1.21e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal1g2157 WD40 0.035 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2157 - - lang:109363640 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2157 1 23637090 23642242 Lal1g2157 1 23637090 23642242 ECH
Lal2g1784 2 20102080 20107220 Lal1g2157 1 23637090 23642242 LSH