Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2129 ATGGAAAATCAATTTTTTCTCAATCCTCAAATGTGGCAATCCTCAAATGTTGAAGCAATTATGAATAATTTTCCTTCTAAGGAAACCCAAGATTGCTTTTACAAATGGGATAAATCAAATGATCAAAATCTTCAATTTGATTCATCACTTAGTTCAATTGTATCTTCCCCTTCAGCTTCAAATTCCAACATGTCAAATGATAATTTTGTCATAACAGAACTCATAGACAAATTAGGAAACATTGGTGGTAGTGTTACAACTAATAATAACAACACTAACACTTCATGTTATAACACCCCTTTGAGTTCTTCACCTAAGATCAACAATAATAACCACTTTGAGAAACCAATTATGGCATTGAATTCTTCAACTGTGGCTGAGTTTTTAGCTGATCCTGGTTTTGCTGAAAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGAAGTTTCAATGATAGGAGAACACAATTGGGGTTGAAGAAAAATGCTGAATTGTCTCAAAGATCTAATCTTTTGATGGAAAATGGAAAACTCACTAGAGTTTCAAGCACTCCATCACTTAAAGTTCTTGGAATTGGATCTCAAATGGGTATTCAAGATAACAAGAATACTTCAATGGAAGTTGCTACTTCTCAAGAGGAATCTACAATCTCTGAACAAACTATGAATGGAGACAATGGAGTTATCAAACCTTCCTCTTATATGAGTTCAAGGAAAAGAAAAGGTTCTTCTTCTAAAGGAAAAACCAAAGAAACTTCAACCATTATCAATCATGCCATGAGTGCTGAAGCTAGTGAAGACTCAAATGTGAAACGTTACAAGGCAAATGATGGAAATTTGAAGGAAGAGAAAGAATACAAAGAGGATGAGAAAGAGAAGAAGAGTAACTCAAAACCTCCTGAGCCACCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAACGAGTAAGGAGAGAGAAAATCAGTGAAAGGATGAAGCTTCTTCAAGATCTTGTACCAGGTTGTAATAAGGTAACTGGAAAAGCACTTATGCTAGATGAAATTATAAACTATGTTCAGTCATTACAACACCAAGTTGAGTTCCTTTCTATGAAATTGGCTACTGTTAACACCAGGCTGGATTTTAATATTGAGAGTCTAATCTCAAAAGATGTATATCAATCAAATGATTCCTTGGCACATCCAATATTCCCACTAGATTCCTCAGCACAAGGCTTTTATGGGCAACAACAGCCCCAAAACTCAGCAATCTACAATAACATTCCTAATGGAACATTGTCTCACAGTTCAATGGACCCATTAGATAGTACTACTCTATGCCAAAACATTGCTATGCAGTTACCCTCCCTTAATGGATTTAATGAAGGTGGCTCTCAGTGTCCAGTAGCATTCTCTGAGGAAGATCTTCAAACTATTGTTCAAATGGGTTTTGGCCAAACTTCAAATAGGAAATCACCACAATCCCTGAATTTTAATGGCTCAAATCAAGTACATCTATGA 1527 0.3589 MENQFFLNPQMWQSSNVEAIMNNFPSKETQDCFYKWDKSNDQNLQFDSSLSSIVSSPSASNSNMSNDNFVITELIDKLGNIGGSVTTNNNNTNTSCYNTPLSSSPKINNNNHFEKPIMALNSSTVAEFLADPGFAERAAKFSCFGSRSFNDRRTQLGLKKNAELSQRSNLLMENGKLTRVSSTPSLKVLGIGSQMGIQDNKNTSMEVATSQEESTISEQTMNGDNGVIKPSSYMSSRKRKGSSSKGKTKETSTIINHAMSAEASEDSNVKRYKANDGNLKEEKEYKEDEKEKKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLATVNTRLDFNIESLISKDVYQSNDSLAHPIFPLDSSAQGFYGQQQPQNSAIYNNIPNGTLSHSSMDPLDSTTLCQNIAMQLPSLNGFNEGGSQCPVAFSEEDLQTIVQMGFGQTSNRKSPQSLNFNGSNQVHL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2129 508 SMART finulus 320 370 IPR011598 GO:0046983
Lal1g2129 508 MobiDBLite consensus disorder prediction 207 239 - -
Lal1g2129 508 PANTHER BHLH TRANSCRIPTION FACTOR 19 505 - -
Lal1g2129 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 383 IPR036638 GO:0046983
Lal1g2129 508 MobiDBLite consensus disorder prediction 488 508 - -
Lal1g2129 508 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 505 IPR024097 GO:0006355
Lal1g2129 508 MobiDBLite consensus disorder prediction 207 322 - -
Lal1g2129 508 CDD bHLH_AtBPE_like 304 389 - -
Lal1g2129 508 MobiDBLite consensus disorder prediction 247 263 - -
Lal1g2129 508 Pfam Helix-loop-helix DNA-binding domain 318 365 IPR011598 GO:0046983
Lal1g2129 508 MobiDBLite consensus disorder prediction 264 322 - -
Lal1g2129 508 Gene3D - 311 386 IPR036638 GO:0046983
Lal1g2129 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 364 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2129 Lal-Chr1 23383697 23387283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2129 1 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.687 7.36e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g2129 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2129 - - gmx:100812081 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1740 2 19755181 19758709 Lal1g2129 1 23383697 23387283 LSH
Lal1g2129 1 23383697 23387283 Lal14g0190 14 2122638 2125302 PCT
Lal14g0190 14 2122638 2125302 Lal1g2129 1 23383697 23387283 PCT