Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2127 ATGGCTAAGCCTGGGGTGTTAGATTCTGATCCAGTGATGATGGTGAAGAAAACCTTAGAGTTGAAGAAGAAGGAGCTGAAGAAATTGGTGAAGTCTATTCTTGATGATGATGATTTTAGCATTGAAACAATTGATCAAGCCAATGAAGCACTTTGTGTTATAAAGGATTTGAAGATGAGAAAGAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATTGTCACTTTCTTTGAAGATGCATAGTAATGTTACTTACCCAGATGAATTCAAGTGTCCACTCTCTAAGGAATTGATGAGAGATCCTGTGATTGTGGCTTCTGGTCAGACATACGATAGGCCTTTTATTCAAAAATGGCTGAGTTCCGGAAATAGGACTTGCCCTTCAACCCAACATATCCTCTCACACACTGTCCTCATTCCAAATCACCTAATAAGGCAAATGATAGAACAATGGTCTAAAAAACAAGGGATCGAATTGTCGAACAATTTTAGCTATATAAATGAGGATGGCATAACAGAAGCCGATCGCGACCATTTCCTTTGTTTGCTTAAGAAAATGTCTTCAGAGCTTTCTGATCAAAAGGCAGCTGCGAAAGAACTCCGGTTGTTGACGAAGAAACATCCTTGCTTTCGACTACTTTTTTGTGATTCCGTAGACGCAATTCCCCAACTGCTTAAGCCAATTTGCAGGCGTGGCAGCGATTCTTTCAGTAGTGTTCACCCCGATCTCCAAGAAGACGTAATCACAATACTCCTCAATATCTCAATTCATGACAACAACAAGAAGCTAGTAGCTGAAACTCCAATGGTAATTCCAATCCTTATGAAAGCACTGAGATCAGGAACAACTGAAACAAGAAGCAACGCTGCCGCAGCCCTTTTCACTTTGTCGGCTCTCGACTCGAACAAGGAACTTATAGGGAAATCCGGTGCTTTGAAGCCATTGATCGACCTTTTAGAAGAAGGGCACCCCTTAGCTATGAAGGATGTTGCTTCAGCAATTTTCACTCTATGTGTCATGCAAGAGAACAAATCGAGAGCAGTAAAGGACGGCGCAGTGAGGGTGATCGTGAGGAAGATCAAGGACCGACTTCATATCGATGAATTACTAGCTATCCTTGCGCTGCTTTCAAGTCACCGTAGGGCTATTCAGGACATAGGAGAGCTTGATGCTGTTCCTACCTTACTAAGCATTATGAGAGAGAGTTCCTGCGAACGTAACAAGGAGAATTGCGTCGCAATCCTTCAAACTCTTTGTCTTTACGATAGGTCGAAGTTAAAGGATATAAAGGAAGAGGAGAACAATCATAGAACAATCTCTGAGCTTGCACAGAATGGAACATCAAGAGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTTAACAGGGTTGTTAATATCACACACACTGCATAA 1422 0.4149 MAKPGVLDSDPVMMVKKTLELKKKELKKLVKSILDDDDFSIETIDQANEALCVIKDLKMRKSSSSSSSSSSSSSLSLSLKMHSNVTYPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLSSGNRTCPSTQHILSHTVLIPNHLIRQMIEQWSKKQGIELSNNFSYINEDGITEADRDHFLCLLKKMSSELSDQKAAAKELRLLTKKHPCFRLLFCDSVDAIPQLLKPICRRGSDSFSSVHPDLQEDVITILLNISIHDNNKKLVAETPMVIPILMKALRSGTTETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVMQENKSRAVKDGAVRVIVRKIKDRLHIDELLAILALLSSHRRAIQDIGELDAVPTLLSIMRESSCERNKENCVAILQTLCLYDRSKLKDIKEEENNHRTISELAQNGTSRAKRKASGILERLNRVVNITHTA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2127 473 SMART Ubox_2 90 153 IPR003613 GO:0004842|GO:0016567
Lal1g2127 473 Pfam U-box domain 88 157 IPR003613 GO:0004842|GO:0016567
Lal1g2127 473 SUPERFAMILY ARM repeat 181 463 IPR016024 -
Lal1g2127 473 CDD RING-Ubox_PUB 91 132 IPR045210 -
Lal1g2127 473 ProSiteProfiles U-box domain profile. 86 160 IPR003613 GO:0004842|GO:0016567
Lal1g2127 473 Coils Coil 16 36 - -
Lal1g2127 473 PANTHER U BOX DOMAIN-CONTAINING 5 471 - -
Lal1g2127 473 Gene3D - 167 468 IPR011989 -
Lal1g2127 473 SUPERFAMILY RING/U-box 85 161 - -
Lal1g2127 473 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 471 - -
Lal1g2127 473 Coils Coil 185 205 - -
Lal1g2127 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 160 IPR013083 -
Lal1g2127 473 SMART arm_5 301 341 IPR000225 GO:0005515
Lal1g2127 473 SMART arm_5 381 422 IPR000225 GO:0005515
Lal1g2127 473 SMART arm_5 259 300 IPR000225 GO:0005515
Lal1g2127 473 SMART arm_5 207 258 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2127 Lal-Chr1 23355535 23358861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2127 149 473 U-box Gene Family AT3G07360 60.843 9.69e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2127 - - lang:109360713 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1532 9 17682666 17685802 Lal1g2127 1 23355535 23358861 LSH