Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal1g2093 | ATGTCTGAAGTCGTCAATGCTAGTGGTGGCGGCGGCGGTGGTGGTGGTGGTGGTGAAGTCCCTCAGAACATGACCATCTACATCAACAACCTTAATGAAAAGATTAAGATTGAGGAGTTGAAGAAATCATTGCGCGCTGTTTTTTCTCAGTTCGGGAAGATATTAGAAGTGTTAGCTTTCAAGACGCTGAAGCATAAGGGTCAAGCTTGGGTTGTGTTTGAGGATACAACTTCTGCTTCTAATGCCCTTAGGCAAATGCAAGGCTTCCCTTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACTAAATCAGACGTAATAGCAAAGGCTGATGGTACTTTTGTTCCGAGGGAAAGACGTAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGACCAGCATGATGCTAATTTAGCTGGAATGGGCATAAATCCAGCTTATGCTGGTGCATATGGTGCAACACCTGCTCTATCCCAGATACCTTATCCAGGTGGTGCAAAGTCAATGGTACCCGAGGCTCCGGCGCCACCAAATAATATCCTCTTTATTCAGAATCTTCCCAACGAGACGACACCGATGATGTTGCAAATGCTCTTTCTTCAATATTCTGGTTTCAAGGAAGTTAGAATGGTGGAAACAAAGCCAGGAATTGCCTTTGTGGAGTATGGAGATGAGATGCAATCAACAGTAGCAATGCAGGCTCTACAAGGTTTCAAGATAACCCCACAGAACCCTATGTTGATAACTTATGCCAAGAAATAG | 765 | 0.4405 | MSEVVNASGGGGGGGGGGEVPQNMTIYINNLNEKIKIEELKKSLRAVFSQFGKILEVLAFKTLKHKGQAWVVFEDTTSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRKRHDDKGKKRKDQHDANLAGMGINPAYAGAYGATPALSQIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYSGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal1g2093 | 254 | Gene3D | - | 18 | 122 | IPR012677 | - | |
Lal1g2093 | 254 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 103 | IPR000504 | GO:0003723 | |
Lal1g2093 | 254 | CDD | RRM1_U1A_like | 25 | 102 | - | - | |
Lal1g2093 | 254 | Gene3D | - | 168 | 254 | IPR012677 | - | |
Lal1g2093 | 254 | MobiDBLite | consensus disorder prediction | 116 | 136 | - | - | |
Lal1g2093 | 254 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 180 | 254 | IPR000504 | GO:0003723 | |
Lal1g2093 | 254 | CDD | RRM2_U1A_like | 178 | 250 | - | - | |
Lal1g2093 | 254 | SUPERFAMILY | RNA-binding domain, RBD | 22 | 243 | IPR035979 | GO:0003676 | |
Lal1g2093 | 254 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 96 | IPR000504 | GO:0003723 | |
Lal1g2093 | 254 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 182 | 241 | IPR000504 | GO:0003723 | |
Lal1g2093 | 254 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | 15 | 254 | - | - | |
Lal1g2093 | 254 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 15 | 254 | - | - | |
Lal1g2093 | 254 | SMART | rrm1_1 | 25 | 99 | IPR000504 | GO:0003723 | |
Lal1g2093 | 254 | SMART | rrm1_1 | 181 | 250 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal1g2093 | Lal-Chr1 | 23085205 | 23089501 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal1g2093 | 13 | 115 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 28.571 | 2.06e-06 | 46.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal1g2093 | K11091 | - | jre:109008091 | 402.905 |