Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2093 ATGTCTGAAGTCGTCAATGCTAGTGGTGGCGGCGGCGGTGGTGGTGGTGGTGGTGAAGTCCCTCAGAACATGACCATCTACATCAACAACCTTAATGAAAAGATTAAGATTGAGGAGTTGAAGAAATCATTGCGCGCTGTTTTTTCTCAGTTCGGGAAGATATTAGAAGTGTTAGCTTTCAAGACGCTGAAGCATAAGGGTCAAGCTTGGGTTGTGTTTGAGGATACAACTTCTGCTTCTAATGCCCTTAGGCAAATGCAAGGCTTCCCTTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACTAAATCAGACGTAATAGCAAAGGCTGATGGTACTTTTGTTCCGAGGGAAAGACGTAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGACCAGCATGATGCTAATTTAGCTGGAATGGGCATAAATCCAGCTTATGCTGGTGCATATGGTGCAACACCTGCTCTATCCCAGATACCTTATCCAGGTGGTGCAAAGTCAATGGTACCCGAGGCTCCGGCGCCACCAAATAATATCCTCTTTATTCAGAATCTTCCCAACGAGACGACACCGATGATGTTGCAAATGCTCTTTCTTCAATATTCTGGTTTCAAGGAAGTTAGAATGGTGGAAACAAAGCCAGGAATTGCCTTTGTGGAGTATGGAGATGAGATGCAATCAACAGTAGCAATGCAGGCTCTACAAGGTTTCAAGATAACCCCACAGAACCCTATGTTGATAACTTATGCCAAGAAATAG 765 0.4405 MSEVVNASGGGGGGGGGGEVPQNMTIYINNLNEKIKIEELKKSLRAVFSQFGKILEVLAFKTLKHKGQAWVVFEDTTSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRKRHDDKGKKRKDQHDANLAGMGINPAYAGAYGATPALSQIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYSGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2093 254 Gene3D - 18 122 IPR012677 -
Lal1g2093 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 103 IPR000504 GO:0003723
Lal1g2093 254 CDD RRM1_U1A_like 25 102 - -
Lal1g2093 254 Gene3D - 168 254 IPR012677 -
Lal1g2093 254 MobiDBLite consensus disorder prediction 116 136 - -
Lal1g2093 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 254 IPR000504 GO:0003723
Lal1g2093 254 CDD RRM2_U1A_like 178 250 - -
Lal1g2093 254 SUPERFAMILY RNA-binding domain, RBD 22 243 IPR035979 GO:0003676
Lal1g2093 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Lal1g2093 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 241 IPR000504 GO:0003723
Lal1g2093 254 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 15 254 - -
Lal1g2093 254 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 15 254 - -
Lal1g2093 254 SMART rrm1_1 25 99 IPR000504 GO:0003723
Lal1g2093 254 SMART rrm1_1 181 250 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2093 Lal-Chr1 23085205 23089501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2093 13 115 Eukaryotic Initiation Factors Gene Family AT2G23350 28.571 2.06e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2093 K11091 - jre:109008091 402.905