Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2072 ATGGGAAATGATGCTAATTGCACCATATCTTCCTCTTCCTCTTCATCAACAACATCTTCTATCTCAAACACAAAATCACATACTCACCAAAACTCCAAAAAGGGTCCTTCAAATGACTCAACAAAAGCTCATAAACACTCATCACAAAATGGAACCAATAAGCAAAGCAAGAAGAAGAGAAAGAGGAGTAGTGAGAATGAAGCAACAAAGAATAACCCTACTTTTTATAGAGGTGTAAGAATGAGAAGTTGGGGCAAATGGGTATGTGAAATTCGTGAGCCAAGAAAGAAATCAAGGATATGGTTAGGGACATACCCTACACCAGAAATGGCAGCTAGGGCACATGATGTTGCTGCTTTAGCTATCAAAGGTGATTCAGCTTTTCTCAATTTCCCTAAGTTTGCACAATATTTTCCAACACCAGATTCTACTTGCCCTAAGGATATTCAAGCTGCAGCTGCAAAAGCAGCATCAACCACTATTTTTGAAGATGATACTAAGCATTTTGAAGCTGAAACTGAACAAGATAACCTATTTGTAGAAGAACCTTCATCTTCAACTCTTTCTAATGATCACAATTCTTTGCATGATGATACATTGTTTGACCTACCAGATCTTTTCCCTGATGTAAACAATGGACTTTTATCTTATTCTTCTTCTTCTTCTTGGCATTATTTATGTACAGTTGATAGTGGGTTCAGGCTAGAGGAGCAGTTTTTGTGGGATATATAA 732 0.373 MGNDANCTISSSSSSSTTSSISNTKSHTHQNSKKGPSNDSTKAHKHSSQNGTNKQSKKKRKRSSENEATKNNPTFYRGVRMRSWGKWVCEIREPRKKSRIWLGTYPTPEMAARAHDVAALAIKGDSAFLNFPKFAQYFPTPDSTCPKDIQAAAAKAASTTIFEDDTKHFEAETEQDNLFVEEPSSSTLSNDHNSLHDDTLFDLPDLFPDVNNGLLSYSSSSSWHYLCTVDSGFRLEEQFLWDI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2072 243 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Lal1g2072 243 SUPERFAMILY DNA-binding domain 75 132 IPR016177 GO:0003677
Lal1g2072 243 MobiDBLite consensus disorder prediction 1 74 - -
Lal1g2072 243 PANTHER ETHYLENE RESPONSE FACTOR 6 242 - -
Lal1g2072 243 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Lal1g2072 243 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Lal1g2072 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 242 - -
Lal1g2072 243 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Lal1g2072 243 CDD AP2 76 132 IPR001471 GO:0003700|GO:0006355
Lal1g2072 243 PIRSF PTI6 3 219 IPR017392 GO:0003700
Lal1g2072 243 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
Lal1g2072 243 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Lal1g2072 243 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2072 Lal-Chr1 22938565 22939296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2072 61 240 AP2-EREBP Transcription Factor Family AT2G44940 47.887 2.03e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal1g2072 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2072 - - gmx:100792964 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2072 1 22938565 22939296 Lal1g2072 1 22938565 22939296 ECH
Lal2g1621 2 18308031 18308810 Lal1g2072 1 22938565 22939296 LSH
Lal9g1463 9 16931229 16931972 Lal1g2072 1 22938565 22939296 LSH