Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2068 ATGAGCCAATGTGTTCCAAGTTGGGATGTTGATGATAACAACCCACCACCTCCTAGACTCTCTCTTCGTTCCAACTCCAACTCCACCGCCACCGATGTTCCCATGTTAGACTATGAAGTTGCAGAGCTAACATGGGAAAACGGACAACCTTCAATGCATGGCTTAGGATTGCCGCGACTGCCGGGAAAACCTTCGGTGGCTACCACTAACACCGCTTCCAGGTATACATGGGAGAAGCCTCGTGCAAGTGGCACCTTAGAGTCCATAGTAAACCAAGCTACTAACTTACCCCATCGTGGCAAATTATTGTTTGAAGGTGTTGGTAGTGGTGGTGATAGTAGTGATGTTTATGGAAACATGTTTGCCCCGTGGTTGGCTCCTCGTGGTGCCGCTGCGGTGACTGCTGCCTCAAACACTGTTACTATGGATGCCTTGGTGCCATGCTCCAAGCTGACAAAGGAGCATGGCACTCAGGTCATGGACTCTAATATTCCTCCCAGTATTGGAGGGTGCATGGTGGGCAGCTCCACACATGTCAAGCATCGTAGTGGGGCTGCCAATGCTATTGTCGACCAAGGTACCATCCTTGCCGCTGCAGCAAAGCGTGTAAGGATGACACGAGTGTCGACAGTAGCTAGTAGGGATCAGAGTGTGAGTGGCAGTGCCACCTTTGGGAGAGATAGTCAGCACCTAACACTAGACACGTGCGATAGGGAATTTGACCTGGGTTTCACTTCCACCTCCATGGGGTCCCCGGAAAACACCAGCTCCGCCAAGCAGTGCACCAAGACCACCGTGGATGACCATGATTCTGTATGCCATAGTAGACCAATGAGGGAGGATGGAGATGAGGAAGAGAAAAATAAAGGAATAGGAAAATCATCTGTATGCACCAAAAGGAGTAGGGCTGCTGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATCAACCAAAGAATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGAGTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAACAATTACAAGCACAATTACAAATGATGAATAGAATCAACATGTCATCTATGATGTTACCAATGGCCATGCAACAACAACTTCAAATGTCAATGATGGCTGGTCCAATGGGAATGGGTATGGGTATGGGCATGGGTATGAACATTCCTGGCATTGATATGAATACAATGAACCGTTCTAATATTCCAGGCATCCCTCCACTCCTTCATCCTTCTGCCTTCATGTCAATGCCTTCATGGGATGGCGGCGGCAGTGGCGGCGGAGACCGTGTTCAAGGGCCTCCGGCACCGGTGATGCCTGACCCTTCTATGTTCCCATTTTTTGGATGCCAAGCACAGCCAATGAACATGGATGCCTATAGTAGGATTGCTGCCATGTATCAACAAATGCACCAACCTCCACCTTCTGGTTCTAAGAACTGA 1467 0.484 MSQCVPSWDVDDNNPPPPRLSLRSNSNSTATDVPMLDYEVAELTWENGQPSMHGLGLPRLPGKPSVATTNTASRYTWEKPRASGTLESIVNQATNLPHRGKLLFEGVGSGGDSSDVYGNMFAPWLAPRGAAAVTAASNTVTMDALVPCSKLTKEHGTQVMDSNIPPSIGGCMVGSSTHVKHRSGAANAIVDQGTILAAAAKRVRMTRVSTVASRDQSVSGSATFGRDSQHLTLDTCDREFDLGFTSTSMGSPENTSSAKQCTKTTVDDHDSVCHSRPMREDGDEEEKNKGIGKSSVCTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKSDKASMLDEVIEYLKQLQAQLQMMNRINMSSMMLPMAMQQQLQMSMMAGPMGMGMGMGMGMNIPGIDMNTMNRSNIPGIPPLLHPSAFMSMPSWDGGGSGGGDRVQGPPAPVMPDPSMFPFFGCQAQPMNMDAYSRIAAMYQQMHQPPPSGSKN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2068 488 MobiDBLite consensus disorder prediction 1 30 - -
Lal1g2068 488 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 488 IPR031066 -
Lal1g2068 488 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 372 IPR036638 GO:0046983
Lal1g2068 488 MobiDBLite consensus disorder prediction 245 295 - -
Lal1g2068 488 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Lal1g2068 488 Gene3D - 298 363 IPR036638 GO:0046983
Lal1g2068 488 CDD bHLH_AtPIF_like 302 363 - -
Lal1g2068 488 SMART finulus 308 357 IPR011598 GO:0046983
Lal1g2068 488 Coils Coil 341 361 - -
Lal1g2068 488 MobiDBLite consensus disorder prediction 245 262 - -
Lal1g2068 488 PANTHER TRANSCRIPTION FACTOR UNE10 1 488 - -
Lal1g2068 488 MobiDBLite consensus disorder prediction 263 293 - -
Lal1g2068 488 Coils Coil 308 328 - -
Lal1g2068 488 Pfam Helix-loop-helix DNA-binding domain 307 352 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2068 Lal-Chr1 22883208 22889631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2068 1 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 43.908 8.22e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g2068 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2068 - - gmx:100798775 561.992