Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2055 ATGGATTCTTCTAACTCCCAACAACAACAACAACAACATGAGTATGACCCATCTCAAATGCAAGCATATGATCAATCATCACAACAATATTATTATTATCATGATAATACTAATCAGCAACAAAACCAATACTACCAAGACCAAATCTTGGTCCACCCTCCTGGTGTCACAATCGCCCCTGAACCGGATCAGTCTGCTGGATTCTCACAGACCCAGCAGGTGAACTCGGTTCAGGGTGCGTCAGATGCCGGGTTGTTGAACCCAGGAGGAGTAGTAATGAGAAATCTGACACAGGTTTCCCATTATGCAGGGAATGTAGATGGGGTGTTGCCAGTGATGTATGAACAGATTGGGCCTTCTCAATACAGAGGTAGAGGTCATAGGGGTGGTAGAAGGGGTGGTCGTGGCCATTTCAACCACCGAGGTCGAGCTCCTTACCGTGGTCGGGGACGTGGCAGGGTTGGTGATGGTAGACACTTTCCATCTAATGAAGCAGAGGCACCTGCTGCTGAAGGCACTTCGGTTGTGCAACCTGAATCATTTGCCTCTGGGCAAGTATCATTACCTGATCCAACACAAGCACCGGCTGCAAAGCTGCAGCCGCCACTGGCTAAGCTGTGGTGTGAAATTTGTAAGGCTGAGTGCAATAGTCCCGAAATGCTGCAGCAGCATATAAATGGAAAGCGACATAAGAAGAATTTGCTGGTGCATGAAGAATTACAAAGACGTAAAGCCGTAAACGGACAACTGGGTGGGCAGATTTCTACTTCTGAAACGAATTTAACAATTCAGCCTGAGAATGTTCAGGAATCTAAGACAGACAATCCCAATGATGAAACTGAGCTGCCGAATATCGTGGGAGGGACTTCTGAAGTTCTAGCTGAAGCACCTATGGGGGAACCCGATAACAACTCTGCTGGACAGGGACGTGGTGGGTTCAAGAATAAGAGACGAGGTAGAGGAAGTAAATACATGAGGAGTAATGATGGTTCAAGAATACCAGTGGAACCTAAGCAGGCAATATCTTTTATATGTGAGTTGTGTAATGTTAAGTGTGAATCCCAGGTTGTCTATAACAGTCATATGATAGGGAAAAAGCACATGTCAAATTTCAAGCGTGTCCATGGCCACCAAGGTTTTAATGCAGAAGCAGCGACACAACATCACCCACCCGATGCAAATGATCTGTCAAATTCAAATAATTCTCTAGTCCAACAAGGTGTTAGTGATCCACAGCTCCTTTTGGCTCAGCTCCTGATGACTGTACAATCTGTACTATCTCAAGTCCAAGTACCAGCAATGGCGCTACCGTCAGGCCCTGTGGCCGCTCAGATACAAGCAGTGGCTGGATCAAGTCAACACCTTCAGAATTTGTCACAGACACAAGTCTCAGGATCCACGACGACTCATGTTGAGAGTGAAAATCCGAACGATGTCGGTGTAACAAAGATTCAGCCATTATTTGCCCCACCAGAGTTGAATACCTCTACTGGTCTAAGTAATGACACCCAAACTACAGATGGAAGATCTGAAACTGAAAAAAGGGTGCTCTGA 1554 0.4595 MDSSNSQQQQQQHEYDPSQMQAYDQSSQQYYYYHDNTNQQQNQYYQDQILVHPPGVTIAPEPDQSAGFSQTQQVNSVQGASDAGLLNPGGVVMRNLTQVSHYAGNVDGVLPVMYEQIGPSQYRGRGHRGGRRGGRGHFNHRGRAPYRGRGRGRVGDGRHFPSNEAEAPAAEGTSVVQPESFASGQVSLPDPTQAPAAKLQPPLAKLWCEICKAECNSPEMLQQHINGKRHKKNLLVHEELQRRKAVNGQLGGQISTSETNLTIQPENVQESKTDNPNDETELPNIVGGTSEVLAEAPMGEPDNNSAGQGRGGFKNKRRGRGSKYMRSNDGSRIPVEPKQAISFICELCNVKCESQVVYNSHMIGKKHMSNFKRVHGHQGFNAEAATQHHPPDANDLSNSNNSLVQQGVSDPQLLLAQLLMTVQSVLSQVQVPAMALPSGPVAAQIQAVAGSSQHLQNLSQTQVSGSTTTHVESENPNDVGVTKIQPLFAPPELNTSTGLSNDTQTTDGRSETEKRVL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2055 517 MobiDBLite consensus disorder prediction 120 178 - -
Lal1g2055 517 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 5 478 - -
Lal1g2055 517 SMART c2h2final6 206 230 IPR013087 -
Lal1g2055 517 SMART c2h2final6 343 367 IPR013087 -
Lal1g2055 517 MobiDBLite consensus disorder prediction 460 517 - -
Lal1g2055 517 MobiDBLite consensus disorder prediction 460 480 - -
Lal1g2055 517 SMART ZnF_U1_5 203 237 IPR003604 GO:0003676|GO:0008270
Lal1g2055 517 SMART ZnF_U1_5 340 374 IPR003604 GO:0003676|GO:0008270
Lal1g2055 517 MobiDBLite consensus disorder prediction 296 333 - -
Lal1g2055 517 MobiDBLite consensus disorder prediction 384 404 - -
Lal1g2055 517 Pfam Zinc-finger of C2H2 type 343 367 - -
Lal1g2055 517 Pfam Zinc-finger of C2H2 type 207 230 - -
Lal1g2055 517 MobiDBLite consensus disorder prediction 1 24 - -
Lal1g2055 517 SUPERFAMILY beta-beta-alpha zinc fingers 327 374 IPR036236 -
Lal1g2055 517 MobiDBLite consensus disorder prediction 125 148 - -
Lal1g2055 517 PANTHER OS06G0651300 PROTEIN-RELATED 5 478 - -
Lal1g2055 517 MobiDBLite consensus disorder prediction 264 283 - -
Lal1g2055 517 SUPERFAMILY beta-beta-alpha zinc fingers 200 234 IPR036236 -
Lal1g2055 517 MobiDBLite consensus disorder prediction 489 506 - -
Lal1g2055 517 Gene3D Classic Zinc Finger 193 237 - -
Lal1g2055 517 Gene3D Classic Zinc Finger 323 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2055 Lal-Chr1 22715063 22721250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2055 208 367 C2H2 Transcription Factor Family AT5G61190 24.691 1.88e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g2055 zf-met 1.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2055 - - lang:109325874 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2055 1 22715063 22721250 Lal14g0826 14 10429845 10435938 PCT
Lal14g0826 14 10429845 10435938 Lal1g2055 1 22715063 22721250 PCT