Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2052 ATGGCTTCTAATCTACCCTCAAACCCCGCCGCAACAAAGTCTAAAACGACGCCGTCTCATGAAAAACGACACCGTTCTATATTCGAAATTCCAAATAGCTTCTTCGATTCTTGTATTCTCCTTCCTTCTCCTCACTCTTCCCTCTTCGATCATCATTTCCATGATTCCCATAACGTAACCCTCCAAAACGTTGAACCATCCCAAAACGACGTCGTTTCTGCGCGTAGGTTAACCTGCAATACGTGCAAAGCTCAATTCGATTCGCTTCAAGACCAGCGTTCGCATTTCAAATCTGACATTCATCGATTCAATGTGAAGCTGACAATTGCTGGAAAGAAAATTGTGAAGGAGGAAGATTTTGAGGTGTTGACATCTGAATTAGTCAAAGACTATGATGTATCAAGTATATCTGGGTCCGATAGTGATGATGATAGCGAAAATGAGTCTCAGAATCAAAATCAAGTGCGGCACAAATCAAGCGAAAGCCTCAAACAAAAGTTATTTGTATCTCTGCAGACAGGGCAGAGAGTTTCTGTGTGGAAGTGCTTGATCATGAATATGAATGAGAATGTGTTGTATGATAATGAAAAAGAAGATAGCAAAGTAGTTGAGAGGTTGAAATGTCTGACTGTTGAGCCCAGGAATAATACCCATTTGAGAATTGTTCTGCTTGCATCTGGTGGGCACTTTGCTGCTTGTGTATTTGATGGCGATGCGGTTGTGGCTCACAAGACATTTCACAGATATGTTGTCAGGGCCAAGGCAGGAAAAAAACAGTCGTCAAAAGATGCTTCTGGAAGGGCTGCACATTCTGCTGGAGCTTCGCTTCGTCGTCATAATGAACTTGCATTGAAGAAGGAAGTTCAAGAACTGTTTACTGCTTGGAGACATTATTTCGATGCTTCCAATTGCATTTTTATACACGCACCTTCAAGCAGTCGTCTACTACTTTATGATGGAGAAAGGCCACACTTTACCAATCAGCAGTCTGCCATTAGAAATATTCCCTTGACTGTTCGGAGGCCTACTTTCAGGGAAGCGAAGCGTGTATATAGTCAGTTGACCCAAGTATGCTATGAAGCAGACGAGAAGGAAACCTTAGAAATCAACCAAGAGGATGTAGTATCAATTCATGTTGCTATAAGAAATGGTAGCCCACCTTCGAGCAAAGCGGACATGGATGAGTTGGATCACAAAGATAAAATTGAAACCTGTTCAAGTAAACAAAATGATAAACTCCACATTTCGAGTGACGGAGAGAGTGAGAATGAGCTATGTGATAAATCAACTCCTTTACATCAAGCAGCACAATGTGATGATTCTGAAAAGGTTATGGAACTCCTGGAACAGGGACTGGATCCTTGCACCAAAGATGAAAGGGGACGTACTCCGTACATGTTGGCACATGAGAAGGAAGTCAGAAATGCTTTTAGAAGATTTATGGCATTAAACCCTGATAAATGGGATTGGCATGCTGCAAAAGTGCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCAAAGCAGGCGGGAAAAGATGCTAAGAGAAAAGCCAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGATAAAGTTGGCAACTTCGTAAGAAAGCATGTTGTGCCAATCATGGGGAAGGTTGTGGTAGGAGCTGCGATTGTTTGTGCCACCACTGCTATGGCACTAGTGATTTGTCACCGAGCAAGATACTCTAGCAAGTGTTCTGCACGATGA 1758 0.4221 MASNLPSNPAATKSKTTPSHEKRHRSIFEIPNSFFDSCILLPSPHSSLFDHHFHDSHNVTLQNVEPSQNDVVSARRLTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKKIVKEEDFEVLTSELVKDYDVSSISGSDSDDDSENESQNQNQVRHKSSESLKQKLFVSLQTGQRVSVWKCLIMNMNENVLYDNEKEDSKVVERLKCLTVEPRNNTHLRIVLLASGGHFAACVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKEVQELFTAWRHYFDASNCIFIHAPSSSRLLLYDGERPHFTNQQSAIRNIPLTVRRPTFREAKRVYSQLTQVCYEADEKETLEINQEDVVSIHVAIRNGSPPSSKADMDELDHKDKIETCSSKQNDKLHISSDGESENELCDKSTPLHQAAQCDDSEKVMELLEQGLDPCTKDERGRTPYMLAHEKEVRNAFRRFMALNPDKWDWHAAKVPSALTKEMEESQAAKQAGKDAKRKARAKELKKLRKAKEKKAQDKVGNFVRKHVVPIMGKVVVGAAIVCATTAMALVICHRARYSSKCSAR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2052 585 Pfam Bacteroidetes VLRF1 release factor 221 358 IPR041175 -
Lal1g2052 585 SUPERFAMILY Ankyrin repeat 426 484 IPR036770 -
Lal1g2052 585 Coils Coil 514 534 - -
Lal1g2052 585 MobiDBLite consensus disorder prediction 1 15 - -
Lal1g2052 585 MobiDBLite consensus disorder prediction 407 427 - -
Lal1g2052 585 Gene3D - 388 506 IPR036770 -
Lal1g2052 585 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 539 - -
Lal1g2052 585 MobiDBLite consensus disorder prediction 134 159 - -
Lal1g2052 585 MobiDBLite consensus disorder prediction 1 23 - -
Lal1g2052 585 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lal1g2052 585 ProSiteProfiles Ankyrin repeat profile. 427 459 IPR002110 GO:0005515
Lal1g2052 585 ProSiteProfiles Ankyrin repeat region circular profile. 427 459 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2052 22 532 C2H2 Transcription Factor Family AT1G01930 53.626 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2052 K26089 - gmx:100527709 709.523