Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2048 ATGAGCTTCTTGCAAGGAATAATCGATTCATTCACCTCTGTTTTCTCTCCCGATAACCCTTCTTCTTCTTCTTCAATAATGGATTCACCTTCTCCTTCACTTTCTCATTCCATTTCCAACGAACGCGTCGCTTTCAAGCTCAAAGGATACCTCGATTTGGCCACTCAACAAATCGATAAAGCCGTTAGGGCTGAAGAATGGGGTTTGATCGATGAAGCACTTCTTCATTACAAAAACGCCCAAAGGATTTTCCTTGAAGCTAATTCAACTCCTGTTCCTTCCTTTATCTCTTCCAGTGAACAACAGAAGGTGCAATCACATCGTCAAAAGATATCAAAATGGCAGGGTCAAGTTTCTGAGAGATTACAGGCTCTAAGTAGACGAACAGGTAGCTCATCTGCAAATCAGCCTGAAAATAATCTCTTCACTTGCGAGGGTAAGATTGCGTACCTCTACCCTTCCCAGGCCCCACTAGGTGGGAGCCTTGTGCATTGGGCTGCCCTTTATTGGAGCACCTCAAACTCTGCACGAACTACTTCAGTTCCAATTAAATCATCCAATGCTAGAAAAAATGTGCTACCAAAAAATCCTCAAAGAACAGGTCAGGTGAATAAAGTAGAAAGTCCAAAATCTAGTCAAGTCTCTGGTGCAAGTTATGACTCAAAACTGGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGGCTTGAGAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGGCAGCTAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAGACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCTGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAGTGAGAATGATGCCAGTAGACGATTAAAATCTGAATTTCTTATTCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTTTAATTGGTGCGACTAATAAACCGCAAGAATTGGATGATGCAGTGCTCAGGAGGCTGGTAAAGAGAATTTACATACCTTTACCAGGTGAAAACGTTCGGAAACTTCTACTGAAACACAAACTCAAGGGTCAAGCATTCTCCTTGCCCAGTAGAGATCTAGAAAGGCTTGTAAAAGAGACAGAAGGATACTCCGGAAGTGATCTGCAAGCCTTATGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTGCTGGCATTCTTACTGTTAAGGCAAATCAGGCATGCTTGTTAGAAGTAAGAGGATTGAGGTTCGAGGATTTCAAGAAGGCAATGGCTGTCATCAGACCAAGCTTAAATAAAAGCAACTGGGAAGAGCTTGAGCGCTGGAATGAGGTATTTGGCTCTAATTGA 1554 0.4228 MSFLQGIIDSFTSVFSPDNPSSSSSIMDSPSPSLSHSISNERVAFKLKGYLDLATQQIDKAVRAEEWGLIDEALLHYKNAQRIFLEANSTPVPSFISSSEQQKVQSHRQKISKWQGQVSERLQALSRRTGSSSANQPENNLFTCEGKIAYLYPSQAPLGGSLVHWAALYWSTSNSARTTSVPIKSSNARKNVLPKNPQRTGQVNKVESPKSSQVSGASYDSKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRAARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLASENDASRRLKSEFLIQFDGVTSNPDDIVILIGATNKPQELDDAVLRRLVKRIYIPLPGENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGAGILTVKANQACLLEVRGLRFEDFKKAMAVIRPSLNKSNWEELERWNEVFGSN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2048 517 Pfam ATPase family associated with various cellular activities (AAA) 277 407 IPR003959 GO:0005524|GO:0016887
Lal1g2048 517 Pfam AAA+ lid domain 432 462 IPR041569 -
Lal1g2048 517 PANTHER BNAC04G50250D PROTEIN 6 133 - -
Lal1g2048 517 PANTHER BNAC04G50250D PROTEIN 174 517 - -
Lal1g2048 517 MobiDBLite consensus disorder prediction 179 217 - -
Lal1g2048 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 514 IPR027417 -
Lal1g2048 517 ProSitePatterns AAA-protein family signature. 379 398 IPR003960 GO:0005524|GO:0016887
Lal1g2048 517 PANTHER AAA DOMAIN-CONTAINING 6 133 - -
Lal1g2048 517 PANTHER AAA DOMAIN-CONTAINING 174 517 - -
Lal1g2048 517 CDD AAA 244 407 - -
Lal1g2048 517 CDD MIT_spastin 47 125 - -
Lal1g2048 517 Gene3D - 408 495 - -
Lal1g2048 517 Gene3D - 236 511 IPR027417 -
Lal1g2048 517 Gene3D - 40 129 - -
Lal1g2048 517 SMART AAA_5 273 409 IPR003593 -
Lal1g2048 517 SMART smart 47 124 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2048 Lal-Chr1 22659039 22666955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2048 236 498 Calmodulin-binding Proteins AT3G56690 38.603 2.02e-45 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2048 K13254 - gmx:100780946 747.273