LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g2043	ATGGTGAGAGGAAAAACTCAAATGAGGAGAATAGAGAATGCCACAAGCAGACAAGTAACATTTTCTAAGAGGCGTAATGGACTTCTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTTTCTCCCAGAGGAAAACTTTATGAATTCTCAAGTTCCAGCATGCAGGAAACAATTGAACGCTTCCGTAGACATACCAGGAATTCTCAAACATCACATGTATCAGATGAACAAAATATGCAGTATTTGAAGCATGAAACGGAAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAAGGTAAACTCTTGGGAGAAGGTTTGGGATCATGCTCCTTAGAAGAACTACAAGAGATAGAAAATCAGTTAGAAAAGAGTGTAAGTAATGTTCGTGCAAGAAAGACTCAGGTTTACAAGGAACACATTGAACATCTACAAGAAAAAGAAAAAGCCTTAATTGCTGAAAATGTCAGACTCTCTGAACAGTATGGTAAGCAGTCAGAGGCAGAAACAAAGGATCAGAGAGAAATTCAAGGCAATGCAGAAAGCAGTAGTCCAAGTACAGATGTTGAGACTGAATTGTTCATTGGACTACACAGATTCAAAGCACTTCTACTAGGTGTTTCTAAAGGTTGA	660	0.3833	MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSMQETIERFRRHTRNSQTSHVSDEQNMQYLKHETENLMKKIELLEASKGKLLGEGLGSCSLEELQEIENQLEKSVSNVRARKTQVYKEHIEHLQEKEKALIAENVRLSEQYGKQSEAETKDQREIQGNAESSSPSTDVETELFIGLHRFKALLLGVSKG	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g2043	219	CDD	MADS_MEF2_like	3	78	IPR033896	GO:0000977\|GO:0045944
	Lal1g2043	219	MobiDBLite	consensus disorder prediction	170	197	-	-
	Lal1g2043	219	Coils	Coil	150	170	-	-
	Lal1g2043	219	Pfam	K-box region	83	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal1g2043	219	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lal1g2043	219	PANTHER	MADS BOX PROTEIN	1	208	-	-
	Lal1g2043	219	Coils	Coil	87	107	-	-
	Lal1g2043	219	PANTHER	MADS-BOX PROTEIN SOC1	1	208	-	-
	Lal1g2043	219	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lal1g2043	219	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lal1g2043	219	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lal1g2043	219	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal1g2043	219	SUPERFAMILY	SRF-like	3	86	IPR036879	GO:0003677\|GO:0046983
	Lal1g2043	219	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Lal1g2043	219	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Lal1g2043	219	Gene3D	-	14	96	IPR036879	GO:0003677\|GO:0046983
	Lal1g2043	219	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lal1g2043	219	Coils	Coil	121	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g2043	Lal-Chr1	22572694	22589306	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g2043	1	158	MADS-box Gene Family	AT2G45660	74.051	8.45e-84	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lal1g2043		K-box	1e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g2043	-		-	gmx:100037477	288.115

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g2043	1	22572694	22589306	Lal1g2043	1	22572694	22589306	ECH