Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2041 ATGAATATGATGAGAAGGTTGAAAAGCATTGCATCTGGAAGAACTTCTATTTCTTCGGATCATGGAGGAGATTCTATCACCAAAAAAGCCAAGTTTAATCAAGAGAATGAAGGGAATGTCATTGAGGAAACAAATCATGTTGAGAGGGGCAACAAAGATGAGGAGCAACATGTAGATTCATCGAGAGAAACTACTGTTGGAACGTCTATTTCCGTTGTTTCTACGGTAGCAAGAACTGAGAAGTCGGGTTATGATCAACTTCCGAAAGAATTAAATGAAATGAAAATTAGAGATGAGAAGGGAAAAACCAACAATGAGAAAGATATGGAGGCAACTGTTGTGAATGGTAATGGAACAGAAACGGGTCAGATAATTACAACTGCTATCGGTGGTCGAGAAGGACAACCCAAGAAGACAATCTCGTATATGGCAGAACGTGTCGTTGGTACTGGTTCTTTCGGTGTTGTATATCAGGCTAAGTGCCTTGAAACCGGTGAATCAGTCGCGATAAAGAAGGTGTTGCAGGACAAAAGGTATAAGAATAGGGAACTCCAGGTTATGCGTACGCTTGACCATACTAATGTTCTTAAACTAAAGCACTGTTTCTATTCAACGACCGATAAAGATGAGGTGTACCTTAACCTTGTTTTGGAGTATGTACCTGAAACTGTATACAGAGTTTCAAAGAACTATATAAGGATGCACCTGAACATGCCTATGCTTTTAGTGCAACTTTATACATACCAGATATGTCGTGGCTTAAATTATATGCACCACGTGATCGGTGTCTGTCATCGTGACATCAAACCCCAAAATCTATTGGTTAATCCCCAAAGTCATCGGTTAAAAATATGTGATCTTGGGAGTGCAAAGATTTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCACGGTATTATAGAGCTCCGGAACTTATATTTGGGGCAACAGAATACACGACCGCGATTGATATTTGGTCTGCTGGTTGTGTATTGGCTGAGCTACTTCTAGGCCAGCCGATGTTTCCCGGAGAGACTGGTGTCGATCAGTTGGTCGAGATAATTAAGATCCTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAACCCAAATTACACTGAATTTAAGTTTCCTCAAATTAAAGCGCATCCATGGCACAAGGTTTTTCACAAAAATATGCCTCGTGAAGCGGTCGATCTCGTGTCTAGGATGCTTCAGTATTCACCGAATTTACGTTGCACTGCTTTGGAAGCATGTGCACACCCCTTCTTCGACAACCTGCGAGACCCGAAAGTATCCTTGCCTAATGGGCGGGCGATGCCTCCATTGTTTGATTTCACAGCTCAAGAACTTGCAGGCGCACCTGACGAGTTGCGTCGGCGTCTCATTCCCGAGCATGCAAGGAGTTGA 1416 0.4266 MNMMRRLKSIASGRTSISSDHGGDSITKKAKFNQENEGNVIEETNHVERGNKDEEQHVDSSRETTVGTSISVVSTVARTEKSGYDQLPKELNEMKIRDEKGKTNNEKDMEATVVNGNGTETGQIITTAIGGREGQPKKTISYMAERVVGTGSFGVVYQAKCLETGESVAIKKVLQDKRYKNRELQVMRTLDHTNVLKLKHCFYSTTDKDEVYLNLVLEYVPETVYRVSKNYIRMHLNMPMLLVQLYTYQICRGLNYMHHVIGVCHRDIKPQNLLVNPQSHRLKICDLGSAKILVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPMFPGETGVDQLVEIIKILGTPTREEIRCMNPNYTEFKFPQIKAHPWHKVFHKNMPREAVDLVSRMLQYSPNLRCTALEACAHPFFDNLRDPKVSLPNGRAMPPLFDFTAQELAGAPDELRRRLIPEHARS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2041 471 PANTHER SHAGGY-LIKE KINASE 6 471 - -
Lal1g2041 471 ProSiteProfiles Protein kinase domain profile. 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2041 471 MobiDBLite consensus disorder prediction 41 61 - -
Lal1g2041 471 MobiDBLite consensus disorder prediction 1 65 - -
Lal1g2041 471 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
Lal1g2041 471 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 471 - -
Lal1g2041 471 Pfam Protein kinase domain 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2041 471 CDD STKc_GSK3 137 429 IPR039192 -
Lal1g2041 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Lal1g2041 471 SMART serkin_6 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g2041 471 SUPERFAMILY Protein kinase-like (PK-like) 141 451 IPR011009 -
Lal1g2041 471 MobiDBLite consensus disorder prediction 9 23 - -
Lal1g2041 471 Gene3D Transferase(Phosphotransferase) domain 1 222 470 - -
Lal1g2041 471 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2041 Lal-Chr1 22556447 22562883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2041 148 429 Core Cell Cycle Gene Families AT1G76540 36.271 7.69e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal1g2041 Pkinase 2.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2041 K00924 - gmx:100786458 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1385 9 15551422 15557866 Lal1g2041 1 22556447 22562883 LSH
Lal1g2041 1 22556447 22562883 Lal6g0922 6 6417684 6423256 PCT
Lal6g0922 6 6417684 6423256 Lal1g2041 1 22556447 22562883 PCT