Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2035 ATGTTGGGTTCAGGTACAAATTTGGTGACAACAGTAATTGGATTTGGATTGAGTGCAACTTTCATTGTCTATGTCTGCACTAAAATTATTTGTGCAAGGCTAAGACGTAGTGCAGAATCTCGAATGATTTATGAGTTTGAATCAAGGATTGATATAGAACAGCCAGAACACCATGTCAATGACTCTGAACCTGGACCTGTTCTGCTCGATGCAATCCCCACTTTGAAGTTCGACGAAGAAGCATTCAGTTCCATTCAAAATACACAGTGTGTAATATGTTTAGCAGATTACAAAGAAAAAGAAATATTGCGCATGATGCCGAAATGCGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTTCGAAAACAAACTACCTGTCCGGTATGCCGTCTATCATTGAAAACTTCTTCTGAAACAAAACATGCAAGAAATGTAACATTTAGCATTAACCAATCTTTTGATGAGTCTTATACGCATGGAGGGAATGAAGATATTCAGGGTCATGTTGTTGAACCAACTACTAGTAACTCATTACAAGCAACTTCTGGTGAACCAGAAGCAAGGCATTGA 576 0.3837 MLGSGTNLVTTVIGFGLSATFIVYVCTKIICARLRRSAESRMIYEFESRIDIEQPEHHVNDSEPGPVLLDAIPTLKFDEEAFSSIQNTQCVICLADYKEKEILRMMPKCGHTFHLSCIDIWLRKQTTCPVCRLSLKTSSETKHARNVTFSINQSFDESYTHGGNEDIQGHVVEPTTSNSLQATSGEPEARH 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2035 191 Pfam Ring finger domain 89 132 IPR001841 -
Lal1g2035 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Lal1g2035 191 PANTHER OS02G0676500 PROTEIN 1 165 - -
Lal1g2035 191 MobiDBLite consensus disorder prediction 170 185 - -
Lal1g2035 191 PANTHER OS11G0150450 PROTEIN 1 165 - -
Lal1g2035 191 SMART ring_2 90 131 IPR001841 -
Lal1g2035 191 SUPERFAMILY RING/U-box 89 139 - -
Lal1g2035 191 CDD RING-H2_EL5_like 89 132 - -
Lal1g2035 191 MobiDBLite consensus disorder prediction 162 191 - -
Lal1g2035 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 138 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2035 Lal-Chr1 22489216 22492697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2035 79 143 C3H Transcription Factor Family AT4G10160 53.731 1.88e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2035 - - gmx:100780922 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2035 1 22489216 22492697 Lal6g0913 6 6326567 6328415 PCT
Lal6g0913 6 6326567 6328415 Lal1g2035 1 22489216 22492697 PCT