Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2031 ATGGGTATCAGTGGTAATTTCTGGGAGCTGTTGAAACCCTATTCACGCAACGAAGGTTTTGATTTCTTGAGGAACAAGCGAGTCGCTGTGGACCTTTCATTCTGGATTGTTCAACACAACAATGCTATCAAAACCCATGTTATCAAACCACATCTTAGACTCACTTTCTTCAGAACCATTAATCTTTTTTCTAAGTTTGGAGCATTCCCGGTGTTTGTAGTTGATGGGACTCCATCGCCGTTGAAGTCACAGGCTAGGATTGCGAGATTTTTCCGGAATTCTGGCATTGAATTGACTAGCTTGCCGGTGCCTGAACAAGGTGTATCAGCTGAGAGGAACCGTTCATTTTCAAGATGTGTTCAAGAATGTGTGGAACTTGTGGAACTACTTGGTATGCCTGTATTAAAGGCTAAAGGAGAGGCCGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATTACAGCTGACAGTGATGCATTCCTTTTTGGAGCCAAATGCATTATAAAGTCTTTCCGCCCAAATTCCAAAGAACCATTTGAATGTTACAATATCTCAGATATTGAAACCGGCCTTGGGTTGAAGAGGAAACAATTAATAGCAATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAGTTGGGCTTGAGACTGCTCTTCATTTTGTTCAGGCATTTAACGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCATTACAAGTTCCCATCAGCACCGAATCGGAGGACAATATGCATAAAGCTGGGAACTCCCCAAATACAAAACAATCTCATTGCTCATTCTGTGGGCATCCGGGTAGCAAACGAGATCATATCAGGTTTTCGTGTGAATATTGTATATCAAATGATGGCGAAGGTTGCATACTAAAAGAAGAAGGTTTTAAATGCAAATGCTTCTCATGTGGTATGAATAGGAAGCATAAGGAACAGAAAAGGCTCGAAATTTGGCACACAAAAGTTTGTCACAAGATTGCGGAGGAGTCAAATTTTCCCAATGATGAAATCATTAATATGTATTTATGTAGCGATAATGGTCACTTTTCTGCAATCAATGGCCCTCACATGATATGGGAGAGACCCAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCGTCGTACATTCAGCGGTTGATGTTTCCTATGATGTCCACCATGTTTTTGAGAGATAAAGCTTCTACTACAGTAGAAAGTTTGTTATTCGGGCAATACGAGTTTGATTCATTACACCGTGCAAAGATTATAAACGGATTTCAGTTTTACGTGGTAAAGTGGAAACGAGCAGCGGGAAATTTCACGTATGCAATTCGTTCAAATGGGTCTGGCACGCAACAAGATGTTGTAGAGCTTGACAAATTGGTGGATCTACTGGATGACTGTGATGTTCCAATGATTCACGTGGACGACGGGTGCAGTTTTTTGTTGACAGATGAAAATATGGACCTTGTAGCGGCTGCTTTTCCCGAAGAAGTTAAAAGATTTTGGCAGGAACAGGAACAGAAGGATTTGAAAAGAAAAAGGAATTCTACTTCAAGATCTCAAGAATATGAAAATGAAAATTCAGAATCACCAAACTCCAAAAGTATCCAACTCAACATTACAAAGTTCTATCCATCAACCAAAATTAAACACGAGTCGAAACAACAAGAGTCATCCAAGAAACCTGATACCGAAGAGAGTGAAGCCTCGACAAGGAAAAGGAACGTGTCGGGTCCTAATCTTCCGAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAG 1830 0.4033 MGISGNFWELLKPYSRNEGFDFLRNKRVAVDLSFWIVQHNNAIKTHVIKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRNSGIELTSLPVPEQGVSAERNRSFSRCVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKSFRPNSKEPFECYNISDIETGLGLKRKQLIAISLLVGNDHDMNGVRGVGLETALHFVQAFNEDDILNRLHEIGKGNALQVPISTESEDNMHKAGNSPNTKQSHCSFCGHPGSKRDHIRFSCEYCISNDGEGCILKEEGFKCKCFSCGMNRKHKEQKRLEIWHTKVCHKIAEESNFPNDEIINMYLCSDNGHFSAINGPHMIWERPNIEMLIDFLNFHQHWEPSYIQRLMFPMMSTMFLRDKASTTVESLLFGQYEFDSLHRAKIINGFQFYVVKWKRAAGNFTYAIRSNGSGTQQDVVELDKLVDLLDDCDVPMIHVDDGCSFLLTDENMDLVAAAFPEEVKRFWQEQEQKDLKRKRNSTSRSQEYENENSESPNSKSIQLNITKFYPSTKIKHESKQQESSKKPDTEESEASTRKRNVSGPNLPKSVRRRLLFD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2031 609 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Lal1g2031 609 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Lal1g2031 609 SMART xpgineu 128 198 IPR006086 GO:0004518
Lal1g2031 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Lal1g2031 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Lal1g2031 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Lal1g2031 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Lal1g2031 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Lal1g2031 609 CDD PIN_GEN1 5 202 - -
Lal1g2031 609 Pfam XPG N-terminal domain 1 88 IPR006085 GO:0004518
Lal1g2031 609 Gene3D - 198 264 - -
Lal1g2031 609 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 597 - -
Lal1g2031 609 MobiDBLite consensus disorder prediction 564 589 - -
Lal1g2031 609 MobiDBLite consensus disorder prediction 522 537 - -
Lal1g2031 609 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 413 IPR036279 -
Lal1g2031 609 SMART xpgn3 1 96 IPR006085 GO:0004518
Lal1g2031 609 MobiDBLite consensus disorder prediction 538 563 - -
Lal1g2031 609 Gene3D - 2 197 - -
Lal1g2031 609 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 597 IPR006084 -
Lal1g2031 609 MobiDBLite consensus disorder prediction 522 609 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2031 1 232 Core DNA Replication Machinery Family AT5G26680 28.627 5.77e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2031 K15338 - gmx:100791251 885.56