Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2023 GAAAAACATAAACACAAGCAAGAAATTAATATCTTAAGCCTTATTTTGAATCATTCAAGAGGAAAAGAAAAAAAGTGCAAAATGTCATTCACAGGAACACTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAACATTGCTTCAAATGTAGTCATTGCAAGGGATATCTTACGATGAGCACCTACTCATCAATGGATGGTGTCCTTTATTGCAAGCCACACTTTGAACAACTTTTTAAGGAATCTGGCAATTTCAGCAAGAATTTCCAAACGGCAAAGTCTTCTGATAAACAAAATGATATGAATAAGACTCCGAGTAGAGTCTCATCTATGTTCAGTGGAACTCTAGACAAATGCTCCGTCTGCACAAAAACAGTTTATCCACTTGAAAAGGTGTCACTAGAAGGGGAATGCTACCACAAGACCTGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTCACACATTCCTCCTATGCTGCCCTAGATGGTGTCCTATATTGTAGGCACCATTTTGCACAACTTTTCATGGAGAAAGGAAACTACAACCATGTACTTCAAGCTGCTCAAGCACACAAGAAAAATTCTACTCCACCTCCTGAACCAGTTGATGATGAATCCTCAAAGTTACCAGAAGAATCTGAGGAACAAAAAGAAGAAACCCCTTGA 708 0.3856 EKHKHKQEINILSLILNHSRGKEKKCKMSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKHCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNDMNKTPSRVSSMFSGTLDKCSVCTKTVYPLEKVSLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAQAHKKNSTPPPEPVDDESSKLPEESEEQKEETP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2023 235 ProSitePatterns LIM zinc-binding domain signature. 37 71 IPR001781 -
Lal1g2023 235 PANTHER OS06G0237300 PROTEIN 28 234 IPR045268 GO:0051015
Lal1g2023 235 ProSiteProfiles LIM domain profile. 131 191 IPR001781 -
Lal1g2023 235 Gene3D Cysteine Rich Protein 129 197 - -
Lal1g2023 235 ProSiteProfiles LIM domain profile. 35 95 IPR001781 -
Lal1g2023 235 SMART lim_4 36 88 IPR001781 -
Lal1g2023 235 SMART lim_4 132 184 IPR001781 -
Lal1g2023 235 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 63 103 - -
Lal1g2023 235 MobiDBLite consensus disorder prediction 202 235 - -
Lal1g2023 235 Pfam LIM domain 37 92 IPR001781 -
Lal1g2023 235 Pfam LIM domain 133 188 IPR001781 -
Lal1g2023 235 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 159 198 - -
Lal1g2023 235 CDD LIM1_SF3 33 95 - -
Lal1g2023 235 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 28 234 - -
Lal1g2023 235 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 30 62 - -
Lal1g2023 235 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 158 - -
Lal1g2023 235 Gene3D Cysteine Rich Protein 32 127 - -
Lal1g2023 235 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2023 Lal-Chr1 22367185 22369792 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal1g2023 LIM 3.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2023 - K09377 gmx:100779513 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1405 9 15814978 15817874 Lal1g2023 1 22367185 22369792 LSH
Lal1g2023 1 22367185 22369792 Lal6g0940 6 6552340 6553878 PCT
Lal1g2023 1 22367185 22369792 Lal22g0820 22 6128485 6130193 PCT
Lal1g2023 1 22367185 22369792 Lal18g0778 18 9625455 9626859 PCT
Lal6g0940 6 6552340 6553878 Lal1g2023 1 22367185 22369792 PCT
Lal22g0820 22 6128485 6130193 Lal1g2023 1 22367185 22369792 PCT
Lal18g0778 18 9625455 9626859 Lal1g2023 1 22367185 22369792 PCT