Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2022 ATGGCAGATCCTGCTAGTTATGGGAATCTTGAGCGTGATATTGAGCAAATATTCTTTGCTTTGAAAAAGGGCACCCAATTAGTTAAGTATAGTCGAAAAAGGAAGCCAAAATTTTGTCCATTCAGGCTCTCACCGGACGAAACAACACTGATTTGGATTTCTCGCGGAAAGGAAAAGAATCTGAACTTATCTTCTGTTACACGAATCATCGCTGGACAAAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTCACAAAAAAGGGGAACGATCACTTGATCTGATCTGCAAGGACAAAGCTGAGGCTGAGGTATGGTTTGAAGGCCTCAAGGCATTAATTTCTACTGGATCGCGTATTAGGCGCATTGGAAGTGACTTCACTGATGATAGCATTGACGTTAGTCAGAATGGTCGTTCTTTTGTTGGAACACTAGAGTTTACTTCAACCATTGGTCGTGGTAGGTTTTCAGTAGACTCAGATGCGGGGTCAGAACGCCCGAATATGCCAATAAGGACAAGTATCGGAGATGGTTCGCGTGTTAGTGTTTCAAGTATCGGCTACGCAAGTAGTGTAACATCAGGACCAGATGACATTGAGTCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGACAGATGTGATTTCATCTGATGGGTTGGGGAGTCAATCCCCTTCTAAGACAGATGTTTTGGCTCCTAAGGCATTGGAATCTAATGTTGTTATTGATGTGTATCAGATTAGTTCTGGTGTACGTCACATTGCTCTCGTTACAAGGCAAGGAGAGGCGTTTACTTGGGGAGAGGACTCTGGTGGAAGACTCGGTCATGGGTTTGATAATGATTTTTGTCAGCCGCATCTTGTGGAGTCCTTGGCAATGACTAGTGTGAGTTTTGTTTCATGTGGTGAATTTCATACATGTGCTGTATCTGCATCTGGTGATCTTTTCACCTGGGGTGACGGTACACATAATGCTGGACTTCTCGGCCATGGAACTGATGTTAGTCACTACATGCCAAAGAGGGTCGGTGGCCATTTAGAAGGACTTAAGGTTGTATCTGTAGCTTGTGGCTCGTGGCATTCAGCATTGGCAACCTCCAACGGAAGACTGTTTACCTTTGGTGACGGAAGATTTGGTGTCTTGGGCCATGGTGATCGAGAGAGTGTGTCATATCCAAAGGAGGTACAATTATCGAGTGAACAAAAGGCTATTAAGGTTGCATGTGGAGTATGGCACACAGCAGCTATTATAGAGGTAATGGATCAGTTTAGTTCAAATGCTTTGTCTAGAAAACAACTCTTCACATGGGGTGATGGTGATCAATATCATTTGGGACATGTTAACAAGGAAACCTGCCTTCAACCAACTTGCATATCTACACTTGCCGAATATGATTTTCAGCAGGTAGCATGTGGTAACACTATGACTGTCGCCCTCACTCTATCTGGTCATGTCTTCACTATGGGAAGTAATGCATATGGTCAGGTAGGGAATCCTCTCTCTGACGGGAAAGTGCCAATTCTTGTCCGAGATAAGTTGGTAGGCGAGTGCGTGGAGGAAATATCATGTGGTGCACATCATGTTGCTGTTTTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGAGCCAGTGGAAGATTGGGACATGGAGACACTGAAGACCAGAAAACTCCAACATTGGTGGAAGCCTTTAAAGACAGACATGTAAAGAATATTTCATGTGGATCTAACTTTACAACTTGTATATGCATTCATAAATGGGTCTCTGGAGCTGACCAATCTCTTTGCACTGGTTGTCGGCAACCTTTTGGTTTTACTAAAAAAAGGCATAATTGTTATAACTGTGGATTGGTGCATTGTCATGCTTGTAGTTCCAAAAAGGCAATGAATGCAGCATTGGCTCCAACACCAGGCAAACCACATCGTGTATGTGACACTTGTTACGCTAAGCTTAAAGGATCTGTCTCTGAAACTGGTGCTGCTTTTAATAAAGAAGTTACTCGTTCTCGTAATTCCGTACATGGAAGCGAAAGGCTTCATCGAGGAGAAGTAAGGTCTTCAAGAACACTCTTGTTTCCCATCATAGAACCAGTAAAATATCTCCATATGAGAACTAGTAAGCATGGAAGTAAACATGGCTCTTCTTCCATAGTCCGAGCTTCTCAAGTTCCTTCACGTTTACAATTGAAAGATGTTGCATTTCCGAGTTCATTGAGTACAATGCAGAATGTTTTCAAGCCTGTTATATTTCCAAGCCAACCTCCAATCCAATCACCAGCTCCAGCTCTACCTGCACCAGTTATTTCAAGACCCACATCACCATATTCAAGAAGACCAAGCCCGCCACGTTCCACCTCCCCTGGATTTTCGAGAAGTCTCATTGATAGTTTAAAGAAGAAAAATGAGCTTCTGAATCAAGAAGTCTCAAAATTGCATAAACAAATTCGAAGTTTGAAGCAGAAGAGTGACATGCAAGAAATGAAGATTGAGAAGCTGCAGAAAAATGTTGAGGGAGACACCTCATTGGTCGGAGAGGAATCTTCTAAGCATAGAGTAGCAAAGGAATTTATTAAGTCCATGAAAGATCAGTTGATTGAAGTGACTGAGAAGTTTCCATCTGATATGTCTGGAAGTGAAACCTTGAGAATGATGCAAGCTCAAGCTAAAGATTTTCTTGAAGAAAAAACAGAACTTGAATCTTCTTCCCTCCCACCAATCTTTGAGTCTGTGCAACAAAGTGCACCTGATATACCTGCTTCAGAAAATGACTCTGCTGAACTGCAAGAACAAAGACAAGAAGAAAATGATGCTGCTGCTTCTGTTGCTGAGGCCAATTCATCAATAAATGAAGGAAATGTTCTTCAAGAAAGCAACAGATTATTAGAATCTAGTACAGAAGTTCCTATACCAACCTCAAGTAGTTCAACATCACTTGAATCATATAAATGTGGAAAAGAAGGAGAAACATCACTCATTGAACAATTTGAACATGGTGTTTATATCACTGCTATAGTACTACCTAGTGGTACCAAAGTATTCAAGCGAGTTAGATTCAGTAAGCGAAAATTCGATGGGCATCAAGCAGAAGAATGGTGGAACAGGAACAAAGATAGGGTGTATAAAAAATATAGTCCAGCAGGTACAAAAGATGCAGCAGGAACTGGTTCATCTGTAACACTGCCACATTCTGAAGACAATGTTGAGGCATCACCTTCTAAAATGTAG 3258 0.4168 MADPASYGNLERDIEQIFFALKKGTQLVKYSRKRKPKFCPFRLSPDETTLIWISRGKEKNLNLSSVTRIIAGQRTAVFRRYLRPEKDYLSFSLIHKKGERSLDLICKDKAEAEVWFEGLKALISTGSRIRRIGSDFTDDSIDVSQNGRSFVGTLEFTSTIGRGRFSVDSDAGSERPNMPIRTSIGDGSRVSVSSIGYASSVTSGPDDIESLGDVYIWGEVWTDVISSDGLGSQSPSKTDVLAPKALESNVVIDVYQISSGVRHIALVTRQGEAFTWGEDSGGRLGHGFDNDFCQPHLVESLAMTSVSFVSCGEFHTCAVSASGDLFTWGDGTHNAGLLGHGTDVSHYMPKRVGGHLEGLKVVSVACGSWHSALATSNGRLFTFGDGRFGVLGHGDRESVSYPKEVQLSSEQKAIKVACGVWHTAAIIEVMDQFSSNALSRKQLFTWGDGDQYHLGHVNKETCLQPTCISTLAEYDFQQVACGNTMTVALTLSGHVFTMGSNAYGQVGNPLSDGKVPILVRDKLVGECVEEISCGAHHVAVLTSRSELYTWGRGASGRLGHGDTEDQKTPTLVEAFKDRHVKNISCGSNFTTCICIHKWVSGADQSLCTGCRQPFGFTKKRHNCYNCGLVHCHACSSKKAMNAALAPTPGKPHRVCDTCYAKLKGSVSETGAAFNKEVTRSRNSVHGSERLHRGEVRSSRTLLFPIIEPVKYLHMRTSKHGSKHGSSSIVRASQVPSRLQLKDVAFPSSLSTMQNVFKPVIFPSQPPIQSPAPALPAPVISRPTSPYSRRPSPPRSTSPGFSRSLIDSLKKKNELLNQEVSKLHKQIRSLKQKSDMQEMKIEKLQKNVEGDTSLVGEESSKHRVAKEFIKSMKDQLIEVTEKFPSDMSGSETLRMMQAQAKDFLEEKTELESSSLPPIFESVQQSAPDIPASENDSAELQEQRQEENDAAASVAEANSSINEGNVLQESNRLLESSTEVPIPTSSSSTSLESYKCGKEGETSLIEQFEHGVYITAIVLPSGTKVFKRVRFSKRKFDGHQAEEWWNRNKDRVYKKYSPAGTKDAAGTGSSVTLPHSEDNVEASPSKM 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2022 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 668 IPR013083 -
Lal1g2022 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 441 492 IPR000408 -
Lal1g2022 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 257 267 IPR000408 -
Lal1g2022 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Lal1g2022 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Lal1g2022 1085 Gene3D - 159 431 IPR009091 -
Lal1g2022 1085 Gene3D - 432 610 IPR009091 -
Lal1g2022 1085 MobiDBLite consensus disorder prediction 950 993 - -
Lal1g2022 1085 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Lal1g2022 1085 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Lal1g2022 1085 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Lal1g2022 1085 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Lal1g2022 1085 PRINTS Chromosome condensation regulator RCC1 signature 482 500 IPR000408 -
Lal1g2022 1085 PRINTS Chromosome condensation regulator RCC1 signature 540 561 IPR000408 -
Lal1g2022 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Lal1g2022 1085 Pfam FYVE zinc finger 597 662 IPR000306 GO:0046872
Lal1g2022 1085 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1063 - -
Lal1g2022 1085 MobiDBLite consensus disorder prediction 923 993 - -
Lal1g2022 1085 CDD PH_PLC_plant-like 12 124 - -
Lal1g2022 1085 SUPERFAMILY FYVE/PHD zinc finger 597 668 IPR011011 -
Lal1g2022 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 442 489 IPR000408 -
Lal1g2022 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Lal1g2022 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 377 426 IPR000408 -
Lal1g2022 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Lal1g2022 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Lal1g2022 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 546 593 IPR000408 -
Lal1g2022 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Lal1g2022 1085 Gene3D - 13 130 IPR011993 -
Lal1g2022 1085 SUPERFAMILY RCC1/BLIP-II 211 598 IPR009091 -
Lal1g2022 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Lal1g2022 1085 MobiDBLite consensus disorder prediction 767 802 - -
Lal1g2022 1085 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1063 - -
Lal1g2022 1085 SUPERFAMILY PH domain-like 13 123 - -
Lal1g2022 1085 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Lal1g2022 1085 Pfam Transcription factor BRX N-terminal domain 856 890 IPR027988 -
Lal1g2022 1085 ProSiteProfiles BRX domain profile. 1000 1055 IPR013591 -
Lal1g2022 1085 Coils Coil 805 846 - -
Lal1g2022 1085 SMART fyve_4 595 664 IPR000306 GO:0046872
Lal1g2022 1085 Coils Coil 892 912 - -
Lal1g2022 1085 Pfam Transcription factor regulating root and shoot growth via Pin3 1001 1054 IPR013591 -
Lal1g2022 1085 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 601 663 IPR017455 -
Lal1g2022 1085 MobiDBLite consensus disorder prediction 1055 1085 - -
Lal1g2022 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
Lal1g2022 1085 MobiDBLite consensus disorder prediction 1061 1085 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2022 Lal-Chr1 22355775 22363485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2022 997 1055 Major Intrinsic Protein MIP AT1G31880 40.678 1.35e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2022 - - lang:109339054 1753.8