Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2011 ATGGCAGAAAAAGAAGAAGGAGGAGTGTCTAGTGCCACATCTCTGAAGGATCAAGGTAATGAGTTTTTCAAGTCAGGCAAATATCTCAAAGCTGCTGCACTTTATACTCAAGCCATCAAAAAGGATCCTTCTAATCCCACTCTTTATAGTAATCGGGCTGCAGCGTTGCTGCAATTGGATAAGCTTAGTAAAGCCCTTGATGATGCTGAGATGACAATTAAACTAAAACCCGAATGGGAAAAGGGATATTTCAGGAAGGGAAGCATATTGGAGGCCATGAAACGATATGATGATGCCTTAGCTGCATTTCAGATAGCTTTGCAGTATAACCCAAAAAGTCAAGAAGTATCGAAAAAGATAAAGAAGATAAACCAACTTGTGAGAGATAGCAAGCGAGCTCAAGAAGTCGAGAACATGAGATCTAATGTTGACATGGCCAAAAATTTAGATTCGTTGAAACCGGAATTGTCCCGAAAGTATGGATCTGAAGAAAGCTGGAAAGATATGTTCCTTTTCCTAGTTGAAACTATGGAGACGGCTGTCAAAACCTGGCACGAAACTTCGTCTGTGGATGCTAGAGTTTACTTTCTTCTTGATAAGGACAAGACAGACACCGATAAGTATGCCCCAATTGTGAATATTGATAAGGCCTTTGAATCGCCAGATACACACAGCAACTGTTTTTCATATCTTAGGCAGTATGCTGAGGAGTCTTTGTCTGGAGCAGCCTGCTTAGTTGTTCGCAAAAGCAGCATTGGTTATCCACAGATCTGGAAAGGCCAAGGATTGAGAAAGTGGAAAAATGCGCAAAATGATGGTTTTTTTGTTCAATTTGAGTCACCTTCCCTGCGAAAGCTGTGGTTTATTCCTAGTTCCAACGAAAAGGGACAAACATTATGCAGGGACCCAGAGGTGTTGGACATCGGTGTTCATGAAGTTCTTCCGCGCTTATTCAAAGAAAAGTTGCCCAATTCTTAG 978 0.4141 MAEKEEGGVSSATSLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLSKALDDAEMTIKLKPEWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPKSQEVSKKIKKINQLVRDSKRAQEVENMRSNVDMAKNLDSLKPELSRKYGSEESWKDMFLFLVETMETAVKTWHETSSVDARVYFLLDKDKTDTDKYAPIVNIDKAFESPDTHSNCFSYLRQYAEESLSGAACLVVRKSSIGYPQIWKGQGLRKWKNAQNDGFFVQFESPSLRKLWFIPSSNEKGQTLCRDPEVLDIGVHEVLPRLFKEKLPNS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2011 325 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Lal1g2011 325 Coils Coil 52 72 - -
Lal1g2011 325 SMART tpr_5 46 79 IPR019734 GO:0005515
Lal1g2011 325 SMART tpr_5 80 113 IPR019734 GO:0005515
Lal1g2011 325 SMART tpr_5 12 45 IPR019734 GO:0005515
Lal1g2011 325 ProSiteProfiles TPR repeat profile. 12 45 IPR019734 GO:0005515
Lal1g2011 325 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 12 321 - -
Lal1g2011 325 Pfam Tetratricopeptide repeat 81 112 IPR013105 -
Lal1g2011 325 Gene3D Tetratricopeptide repeat domain 3 163 IPR011990 GO:0005515
Lal1g2011 325 PANTHER TPR REPEAT CONTAINING PROTEIN 12 321 IPR045248 GO:0006457|GO:0030544|GO:0051879
Lal1g2011 325 SUPERFAMILY TPR-like 12 123 IPR011990 GO:0005515
Lal1g2011 325 Pfam TPR repeat 19 59 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2011 8 123 U-box Gene Family AT3G07370 27.966 8.34e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2011 - - gmx:100775252 558.14