Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1986 ATGAGACCTTTGCATGGCGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTCATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTCTGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACATGTGTAACAGTTGGGACGACAACAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACGTGCAAGTATAAACTGGATATTAAAGTCATACACCAACATGGGAGTGGAAGGTTTGTTTTCTGGGATTGTCAATGTGCTGACATCATTGGCGTATCGGCATCTGACTTAAGAGATCAGATGGTTGCAGAAGGTGAAGATGATCCCAAGGCATTCCCTTTAATTCTGGATGAACTGCTTGCAAGAACAATGGCTCTAAGGGTCAAAGTGCAACCCTCATACAACCAATCTTCTGTTATCAGACTTTCTGAGGATCCAAATTTAATCAAGAATATACTTGATCAAATTGTCATATTTCAGTCTGTGTCTATTACTGCTGATCATGATCCAGACCTTTTACAAGTTTTAACTCCAGCCAAACGATTATCGGCTGACATTGACGTGGACCTCATACAAAGTCCACTGTATAATTCTACTCAGTTGTCATCTTCAAAGGTGGCAAAGCATATCAACATTGACTGA 1278 0.3772 MRPLHGDRIQVSVRKDQFNEWREHLVESSTHVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTLWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQGKYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTTMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCKYKLDIKVIHQHGSGRFVFWDCQCADIIGVSASDLRDQMVAEGEDDPKAFPLILDELLARTMALRVKVQPSYNQSSVIRLSEDPNLIKNILDQIVIFQSVSITADHDPDLLQVLTPAKRLSADIDVDLIQSPLYNSTQLSSSKVAKHINID 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1986 425 SUPERFAMILY Nucleic acid-binding proteins 221 347 IPR012340 -
Lal1g1986 425 Gene3D - 68 198 IPR012340 -
Lal1g1986 425 SUPERFAMILY Nucleic acid-binding proteins 75 196 IPR012340 -
Lal1g1986 425 CDD RPA1_DBD_B_like 106 190 - -
Lal1g1986 425 Gene3D - 4 64 IPR012340 -
Lal1g1986 425 Gene3D - 206 368 IPR012340 -
Lal1g1986 425 Pfam Domain of unknown function DUF223 5 85 IPR003871 -
Lal1g1986 425 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 17 296 - -
Lal1g1986 425 PANTHER REPLICATION FACTOR A 1, RFA1 17 296 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1986 Lal-Chr1 21949044 21952230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1986 6 275 Core DNA Replication Machinery Family AT5G45400 22.414 4.06e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1986 - - lang:109343677 575.089