Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1983 ATGGAAACAACACTCACTTGCAACCTATGTGGTCGAATTCCGGCACCAAAATACAATAACAACCATTATTCTTACGCCCCTTCCTTTTACCTGTTAACTCGCAATACTACTAATGCTTACAACAAATACAAAACTATCATCAAAACCAGTCTTCCAGTCAATAACAAACCGAGAAGACGAAGGACTCGAATCAAATCACCTTCGCCATTGGCACCATTGATCAAAGAATCCAACGAGGCGCGAAGGCAACAAATCGAAGCCGTCGAGATAATTCATCATCAAAATGGAGATCCATTAGGATGGAAGGACCTTGGAAAAGGAGTTGTGAAGTGGATTCGTCATGGTATGAGAGCCATGGCATCTGATTTGGCTTCAGCTGAGTTATTACAAGGCGAATTGGAATTCGCCGAATTGAGGCAGAGAATGGGACCTGGGCTTAGTTTCGTTATCGAAGCGCAGCCTTATTTGAATGCTGTTCCATTGCCTCTTGGACTTGAAGTTGTTTGCTTGAAGGCCTGCACTCATTATCCGACTTTGTTCGATCATTTTCAGAGGGAACTCCGCGAAGTTCTCAATGAATTGCAGAGTAAGTCCTTGGTTCAGGATTGGCGCCAGACCGAGTCGTGGAAACTGCTTAAGGATCTTGCTAATTCAGCTCAGCATCGGGCGGTTGCAAGAAAGACAGTACAGCCGAAGATTGTCCAAGGCGTTCTGGGAATGGACTTAGAAAAGGTGAAGGCAATGCAGCAGAGGATTGATGAGTTCACCAGCAACATGTCGGAGCTGCTCTGGATTGAAAGGGATTCTGAATTGGAGTACACTCAAGAGGAATTAGACGCTGTTCCTAAACCCGATGACACTTCTGATTCATCAAAGCCGATCGAGTTCTTGGTTAGTCATAGCCAGCCTCAGCAAGAACTCTGTGATACCATTTGTAATTTAACTGCCGTCAGTACTTCTACAGGACTTGGGGGAATGCATTCAGTGTTATTCAAGGTTGAAGGGAACCATCGGCTACCACCGACTACTCTTTCGCCAGGAGACATGGTTTGTGTGAGAACATGTGACAGCAAGGGTGCAGTTACAGCTGCTTGCTTGCAAGGATTTGTTGACAATCTTGGAGATGATGGCTGTAGTATTAGTGTTGGCTTAGAGTTACGCCATGGTGATCCTACATTTTCTAAACTATTCGGGAAGAGTGTGCGCATTGATCGTTTTCAAGGACTGGCTGATACTCTTACCTATGAGCGCAACTGTGAAGCCTTGATGCTGCTTCAGAAGAATGGTTTACGCAAGAAGAATCCTTCAATTTTTGTTGTGGCTACACTGTTTGGAGACAGAGAAGATATTACATGGCTTGAGAAGAATGATTTGGTTGACTGGGAAGAAGAGAATTTGAATGGACTATTAGGAAATGAAAACTTCGATGATTCTCAGCGGAGAACAATTGCTTTGGGTTTGAATAAGAAGAGGTCAGTGTTGGTTATCCAAGGGCCTCCTGGTACTGGCAAGACTGGTATACTCAAGCATCTTATAGCATGTGCTGTTCAGCAAGGAGAAAGGGTCCTTGTTACAGCACCTACTAATGCAGCTGTTGACAATATGGTTGAAAAGCTTACAAATGTTGGATTGAATATTGTGCGTGTTGGAAATCCAGCTCGTATATCAAAAACTGTGGCATCGAAGTCCTTGGGAGAAATTGTGAATGCTAAGCTTGCACCTTTTCGAGAAGAGTACGAGAGGAAGAAGTCAGATCTAAGGAAAGATCTAAGTCATTGTTTAAAGGATGACTCACTAGCTGCTGGCATACGCCAACTTCTGAAACAGCTAGGGAGGTCGCTGAAGAAAAAGGAAAAGCAGACTATTAGCGAAGTTCTATCCAGTGCTCAGGTTGTGCTTGCTACTAATACTGCAGCAGCCGATCCTTTGATTCGAAGGCTGGATACTTTTGACTTAGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCCTGCTGGATTCCTATATTGCAGGGTAAGCGTTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGGTGGTCTAGGAATATCTTTACTGGAGAGAGCTACAACTTTGCATGAAGGGATTCTCAACACCAGGTTAACAACACAATACCGTATGAACGATGCAATTGCTAGTTGGGCCTCAAAGGAGATGTATGGAGGATTATTGAAGTCCTCTGAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAATGCCCTCTGCTATTGCTTGATACTAGAATGCCATATGGAAGTCTTTCAATTGGTTGTGAGGAGCATCTAGACCCATCTGGAACAGGCTCACTATATAATGAAGGAGAAGCCAATATAGTTCTGCAGCATGTTTTCTCCTTAATTTACTCTGGTGTTAACCCAAGTGCTATTGTAGTGCAATCTCCTTATGTTGCTCAAGTACAACTTTTGAGGGACATGCTTGATGAGATCCCAGAGGCTGCAGGTACCGAAGTTGCAACAATTGATAGCTTTCAAGGTCGGGAAGCTGATGCAGTAATTTTGTCCATGGTACGGTCGAACACATTGGGAGCTGTTGGATTCCTTGGGGATAGCCGAAGAATCAATGTCGCCATCACAAGAGCACGAAAGCATGTAGCCGTTGTCTGTGACAGCTCAACCATATGCCACAACACCTTCCTAGCAAGACTTCTGCGTCATATCCGGCACTTTGGTCGGGTGAAGCATGTGGAACCTGGTAGTTTTGGAGGATCTGGACTAGGGATGGGTCCACTATTACCTTCAATTGATTAG 2850 0.4414 METTLTCNLCGRIPAPKYNNNHYSYAPSFYLLTRNTTNAYNKYKTIIKTSLPVNNKPRRRRTRIKSPSPLAPLIKESNEARRQQIEAVEIIHHQNGDPLGWKDLGKGVVKWIRHGMRAMASDLASAELLQGELEFAELRQRMGPGLSFVIEAQPYLNAVPLPLGLEVVCLKACTHYPTLFDHFQRELREVLNELQSKSLVQDWRQTESWKLLKDLANSAQHRAVARKTVQPKIVQGVLGMDLEKVKAMQQRIDEFTSNMSELLWIERDSELEYTQEELDAVPKPDDTSDSSKPIEFLVSHSQPQQELCDTICNLTAVSTSTGLGGMHSVLFKVEGNHRLPPTTLSPGDMVCVRTCDSKGAVTAACLQGFVDNLGDDGCSISVGLELRHGDPTFSKLFGKSVRIDRFQGLADTLTYERNCEALMLLQKNGLRKKNPSIFVVATLFGDREDITWLEKNDLVDWEEENLNGLLGNENFDDSQRRTIALGLNKKRSVLVIQGPPGTGKTGILKHLIACAVQQGERVLVTAPTNAAVDNMVEKLTNVGLNIVRVGNPARISKTVASKSLGEIVNAKLAPFREEYERKKSDLRKDLSHCLKDDSLAAGIRQLLKQLGRSLKKKEKQTISEVLSSAQVVLATNTAAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATTLHEGILNTRLTTQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSIGCEEHLDPSGTGSLYNEGEANIVLQHVFSLIYSGVNPSAIVVQSPYVAQVQLLRDMLDEIPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHVEPGSFGGSGLGMGPLLPSID 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1983 949 Coils Coil 576 596 - -
Lal1g1983 949 Gene3D - 410 707 IPR027417 -
Lal1g1983 949 Gene3D - 303 409 - -
Lal1g1983 949 MobiDBLite consensus disorder prediction 54 76 - -
Lal1g1983 949 CDD DEXXQc_SMUBP2 474 724 - -
Lal1g1983 949 Pfam AAA domain 701 904 IPR041679 -
Lal1g1983 949 Gene3D - 723 931 IPR027417 -
Lal1g1983 949 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 65 948 - -
Lal1g1983 949 CDD SF1_C_Upf1 725 921 IPR041679 -
Lal1g1983 949 SMART ultradead3 471 722 IPR014001 -
Lal1g1983 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 912 IPR027417 -
Lal1g1983 949 Pfam AAA domain 475 691 IPR041677 GO:0004386
Lal1g1983 949 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 65 948 - -
Lal1g1983 949 SMART AAA_5 490 705 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1983 Lal-Chr1 21913794 21922192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1983 344 664 Core DNA Replication Machinery Family AT1G08840 23.867 1.70e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1983 - - aip:107625008 1499.95