Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1964 ATGAGCTCGAAGGAGAGACCCACTCTCGGTGGTACGCGGATTAAGACCCGCAAACGGAATATCGCAGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGTTGTTTTCATCGGCTGTCGTACACAGCCTGGAACTACCAAGCCTGATGAGGGCGAGCGCCATCCTTACTCTGTAATAGAGTGTGAGCCCAAGCGTGAATTCATCTTACCATCTGTAATTTACATACAGAAGATTTTGCGGCGAAGGCCGTTTCTCATCAAGAACCTAGAAAATGTCATGCGAAAATTCCTTCAGTCCTTGGAACTATTCGAGGAAAATGAGAGGAAAAAGTTGGCAATCTTCACAGCACTTGCATTCTCCCAGAAGCTGTCTGGCCTTCCGCCAGAAACTGTGTTTCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAAAGGGGAAAAGTTGAGGATAATCTTTTGGATATTTTCCCCCCTGCAAAAAGATCTAATGAGTCTTTCTCTGAACATTTCTTCAAGGAAGGACTGGTGGCCTTGGTGGAGTATAATGAAAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAGTCTGCCTTAACAACACAGATTACAGAGGAGGCTGATATATCTGAAGTTATTGAAACTGTGAAGCTGCAAGTTAGAGATGCTAAATTGCCAGACATTGAGGTTGTGCGAGTATTGTGGGATGTTTTAATGGACGCTGTTCAGTGGTCAGGGAAAAATCAGCAACAGAATTCAAATGCAGCCCTGCGCCAGGTAAAAACTTGGTCCGAGCTGTTGAATACATTCTGCACCACTGGGAAGCTTGAGCTAGAACTGTTGTACAAAGTACAGATGCAATGCTATGAGGATGCTAGATTGGTGAAGCTGTTCCCTGAGATTGTTAGGTCACTTTATGAGGCGGATGTGCTGGCTGAGGATACCATTCTTCACTGGTTCCGAAAAGGAACCAACACCAAGGGCAGGCAAAACTTTACTAAGGCACTCGAACCCTTTGTTAATTGGCTGGAGGAAGCAGAAGAGGAAGAGTAA 1167 0.443 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLVVFIGCRTQPGTTKPDEGERHPYSVIECEPKREFILPSVIYIQKILRRRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEDNLLDIFPPAKRSNESFSEHFFKEGLVALVEYNEKKIFEVKLKEMKSALTTQITEEADISEVIETVKLQVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNSNAALRQVKTWSELLNTFCTTGKLELELLYKVQMQCYEDARLVKLFPEIVRSLYEADVLAEDTILHWFRKGTNTKGRQNFTKALEPFVNWLEEAEEEE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1964 388 Gene3D - 220 388 - -
Lal1g1964 388 SUPERFAMILY ARM repeat 230 385 IPR016024 -
Lal1g1964 388 Coils Coil 98 118 - -
Lal1g1964 388 ProSiteProfiles W2 domain profile. 223 388 IPR003307 GO:0005515
Lal1g1964 388 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 45 - -
Lal1g1964 388 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 46 388 - -
Lal1g1964 388 SMART 542_3 302 387 IPR003307 GO:0005515
Lal1g1964 388 Pfam eIF4-gamma/eIF5/eIF2-epsilon 315 388 IPR003307 GO:0005515
Lal1g1964 388 CDD W2_eIF5C_like 193 381 IPR043510 -
Lal1g1964 388 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 46 388 - -
Lal1g1964 388 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1964 Lal-Chr1 21724164 21728625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1964 277 384 Eukaryotic Initiation Factors Gene Family AT2G34970 29.091 6.22e-07 49.7