Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1956 ATGGATGAAGACAAAAACAATAACAACAATGACAATAGAAATGAAGGAATCATTTGTTATGACTCTAAAAGAGGAGGTTTTCCACCAAAAAGAAGCATAGCTGAGAGACGAGGATTCAGTTACAATGCAACCACAATCAACACCGCGGTTTATAGAACCATCCCAACTCAAACATCATCATGTTCAAGCCCGTTGGCTTCTTCTCCTGCTGATGGTGGATCACCTCGTCTCACCACATCACCTGGCTGCTGCATTAGCCCAAACTCGCTTCTCGATTCACCCATTATGCTCTCTAATTCTCAGGTCATACCATCTCCCACCACGGGAACTTTCCTCCACCAGCCTCTCTTCACTAATCAGGGATCAATGGTCACTTATGAACAACAAGGGAAAGTAGATGATGTGCCCTTTGCTACTTATGACACCAATGATGATCCAAATTCTTTGCCTCATTACTCTGCTTCTCTAAATAAGGTTTCTATTAACTACAACATGATCAATGGAAGAAATTCAGACTACCAACAACATGTCCAAGTTCAAACATCGGTCGATTTTTCTTGCAAAACAGATTTTTCGAAAGAACATGACTTGGATGTGAAAATGGTAGATGATGCGATCCCTAATAATGGTGAGATGCCAATGTTTCAATCCGAGGAACATAGTGACGAAAGCAAGCAGCCGAAAATTGCTAGCCATGTTGATGATATTGAAGGAGTCCAGAATGAGATATCCCATGGAACAGGAATGGTAAGGTCTTCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGTAGCGAGTATCCGAGGAGCTACTACAAATGTACTCAACCTAATTGTCAGGTCAAGAAAAAGGTGGAACGGTCTCATGATGGCCAAATAACAGAAATTATTTACAAGGGTGATCACAACCATATAAAATTACACCCTTGTCGTCGTGCATCGGCATTTCCTACTGATGGGATGTTATACATGGGTGAAGCCAATGAAAGCAGTGTTAATGTTGATGGTGTGTTGGTCTGGAAAAACATTCAGTCTGGAGTAAGAGATACAAAATATGGTTTGGATTGGAAGGCTGATGGTCAGGAAAGGGTTTCGTCGACTTCTGCAGTACCCGACTTTTCAGATCCTATATCCACTAACAAAGCTACATCTCTATGTATGCTTGAACCAGAGGACAATCCAGAACATTCTTCAGCACTAGCCAGTCATGATGGTGATGAAGATGGAGCCATTCAAACTCTAGCATCACTTGAAGATGGTGCTGAAGATGATGAAACTGAGTCAAAACGAAGGAAGAAAGAGAGTCAATTGGTTGAATCAAATTTGACATCCAGGGCTGTTCGCGAGCCTAGAGTAGTAATCCAAATCGAGAGTGATATTGACATACTCGATGATGGTTATCGCTGGCGTAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGTACAAGTCCTGGATGTTCTGTAAGGAAACATGTCGAAAGGGCGTCGCACGATCTTAAATATGTAATTACTACTTATGAGGGAAAACATAATCATGAAGTGCCTATTGCTAGAAATAACAATCAGATAAGCTCAAGTGATGGGCATTTACCTCCTGGTGGTGCTAATGGGCAAATGGCTCTGACTTTAACCGGAAACGGTACTATCCCGAAGCCTGAAACTCAAGTTCAAAGTCTTGCATCTCATTTTGATAGAAAACATGAAATTAGCAATGAGTTTCTCAGGCCAAATTTGGTTGGAAGTTTCAATAGTGATATGAAATTTGGATGTCCTTCCATGTACCAAATGAAGTATTCTTCCTTGAATAATACAATGCCTTATGGCTCATATGGACTGAACTACGATCGTCTTGCAGCGCCTCAAGCTGGATCTCTTGCCTCAGTGTTCCCGGATTTTTCCGTGCCGCTACCATTGAATCTTCCTTCATCCTCCGGAAATTTTTCACTGACCAATATCAATTTTAACCGTGCGAAACCAATGGATTCAACCTACCAGTCTTTTCATTCAGGACAACAGGTGAAGGAGATTGATTCAGCGTTCCAAAGGCCTAAACAAGAACAGGGTACATGCTTATCGCCGGTTGATCATGCAAATGCTTCGCTCGCTTCGTCGTCAGCATCACCATCAATTTATCAAAGTGTCATGGAAAATTTTCCATCATAA 2202 0.4142 MDEDKNNNNNDNRNEGIICYDSKRGGFPPKRSIAERRGFSYNATTINTAVYRTIPTQTSSCSSPLASSPADGGSPRLTTSPGCCISPNSLLDSPIMLSNSQVIPSPTTGTFLHQPLFTNQGSMVTYEQQGKVDDVPFATYDTNDDPNSLPHYSASLNKVSINYNMINGRNSDYQQHVQVQTSVDFSCKTDFSKEHDLDVKMVDDAIPNNGEMPMFQSEEHSDESKQPKIASHVDDIEGVQNEISHGTGMVRSSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGDHNHIKLHPCRRASAFPTDGMLYMGEANESSVNVDGVLVWKNIQSGVRDTKYGLDWKADGQERVSSTSAVPDFSDPISTNKATSLCMLEPEDNPEHSSALASHDGDEDGAIQTLASLEDGAEDDETESKRRKKESQLVESNLTSRAVREPRVVIQIESDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCSVRKHVERASHDLKYVITTYEGKHNHEVPIARNNNQISSSDGHLPPGGANGQMALTLTGNGTIPKPETQVQSLASHFDRKHEISNEFLRPNLVGSFNSDMKFGCPSMYQMKYSSLNNTMPYGSYGLNYDRLAAPQAGSLASVFPDFSVPLPLNLPSSSGNFSLTNINFNRAKPMDSTYQSFHSGQQVKEIDSAFQRPKQEQGTCLSPVDHANASLASSSASPSIYQSVMENFPS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1956 733 MobiDBLite consensus disorder prediction 428 443 - -
Lal1g1956 733 Gene3D WRKY domain 241 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 SUPERFAMILY WRKY DNA-binding domain 462 528 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 Gene3D WRKY domain 455 521 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 Pfam WRKY DNA -binding domain 469 526 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 Pfam WRKY DNA -binding domain 254 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 SMART WRKY_cls 253 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 SMART WRKY_cls 468 527 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 ProSiteProfiles WRKY domain profile. 463 528 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 MobiDBLite consensus disorder prediction 422 449 - -
Lal1g1956 733 SUPERFAMILY WRKY DNA-binding domain 252 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal1g1956 733 MobiDBLite consensus disorder prediction 57 78 - -
Lal1g1956 733 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 19 700 - -
Lal1g1956 733 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 700 IPR044810 GO:0003700
Lal1g1956 733 ProSiteProfiles WRKY domain profile. 254 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1956 Lal-Chr1 21654839 21658224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1956 1 531 WRKY Transcription Factor Family AT5G56270 39.568 6.90e-94 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal1g1956 WRKY 2.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1956 K18835 - gmx:100800211 840.876