Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1949 ATGAACTGCTCCATTTCCGGCGAAGTGCCGGAAGAGCCTGTGGTGTCGAAATCTGGTATTCTCTTCGAGAAGCGTTTGATTGAGAGACACATATTGGATTATGCTAAATGTCCAATTACTGGAGAACCACTTACTTTGGATGACATTGTACCTATCAAAACAGGCAAGATAGTGAAGCCCAGACCTCTGCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAGAATGAATGGGATGGATTGATGCTATCTAATTTTGCGTTGGAGCAACAATTGCACACAGCAAGGCAAGAGCTAAGTCATGCTTTATATCAGCATGATGCTGCTTGCCGTGTGATTGCAAGGCTTAAAAAGGAGCGAGATGATGCCAGGTCATTACTTGCACAGGCAGAAAGGCAATTCCCTATTTCTTCACCAAATGCCACATCAGAAAATGTCTCTGTCCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGCTGGCACCTGGTGCGAAGAAAATTCATCCTGGAATAACTACCAGCATAATTTCTGAGCTAACTGACTGTAATGCTGCTCTTTCACAGCAGAGGAAAAAGCGCCAGATTCCTGCAACTTTGGCTTCTGTTGATGATATAGAGAGATATACCCAGACATCTAGTCACCCCATTCACAAAACAAACAAACCAGGCATTGTATCTCTTGACATTCTTTATCCTAAGGATATAATTGCAACTGGTGGTATTGATACAAATGCTGTTATTTTTGACCGACCCTCAGGACAGATATTATCTACACTAAGTGGCCACTCGAAAAAGGTAACCAGTGTAAAGTTTGTAGGTCAGGGTGATTCAATCTTAACTGGCTCAGCAGATAAGACAGTTCGGTTGTGGCAAAGTTCAGATGATGGTAACTATAACTGCAGACACATTTTGCGGGATCATACGGCTGAGGTGCAAGCTGTCACTGTCCATGCCACCAATAATTATTTTGTGACTGCTTCACTGGATGGAACTTGGTGCTTCTATGATCTGTCTTCAGGGACATGTCTGACTCAGCATCCTGGTGCCAACTGTCCCTTGACACTTGAGCACATTTTACAAGCTATATGA 1092 0.4386 MNCSISGEVPEEPVVSKSGILFEKRLIERHILDYAKCPITGEPLTLDDIVPIKTGKIVKPRPLQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDDARSLLAQAERQFPISSPNATSENVSVLSNGKRAAEDELAPGAKKIHPGITTSIISELTDCNAALSQQRKKRQIPATLASVDDIERYTQTSSHPIHKTNKPGIVSLDILYPKDIIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVGQGDSILTGSADKTVRLWQSSDDGNYNCRHILRDHTAEVQAVTVHATNNYFVTASLDGTWCFYDLSSGTCLTQHPGANCPLTLEHILQAI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1949 363 Gene3D - 198 357 IPR015943 GO:0005515
Lal1g1949 363 SMART WD40_4 210 250 IPR001680 GO:0005515
Lal1g1949 363 SMART WD40_4 298 337 IPR001680 GO:0005515
Lal1g1949 363 SMART WD40_4 253 292 IPR001680 GO:0005515
Lal1g1949 363 Pfam WD domain, G-beta repeat 300 337 IPR001680 GO:0005515
Lal1g1949 363 Pfam WD domain, G-beta repeat 254 291 IPR001680 GO:0005515
Lal1g1949 363 SUPERFAMILY RING/U-box 2 54 - -
Lal1g1949 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Lal1g1949 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Lal1g1949 363 Coils Coil 114 134 - -
Lal1g1949 363 Pfam Prp19/Pso4-like 65 130 IPR013915 -
Lal1g1949 363 SMART Ubox_2 1 65 IPR003613 GO:0004842|GO:0016567
Lal1g1949 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 346 IPR001680 GO:0005515
Lal1g1949 363 CDD RING-Ubox_PRP19 3 53 - -
Lal1g1949 363 Pfam U-box domain 3 52 IPR003613 GO:0004842|GO:0016567
Lal1g1949 363 ProSiteProfiles U-box domain profile. 1 69 IPR003613 GO:0004842|GO:0016567
Lal1g1949 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Lal1g1949 363 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 355 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Lal1g1949 363 SUPERFAMILY WD40 repeat-like 221 350 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1949 Lal-Chr1 21594047 21608463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1949 1 346 U-box Gene Family AT2G33340 75.862 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1949 K10599 - gmx:100527039 621.698