Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1940 ATGTCCTCCTTTCTAATCTACCTTCTCTCCATCTTCTTTTTAGTCAACCCTTGCTTGTCAACATGTCCCCTCAACACCACCGTCCTCACCGTTGTAGTCGGTGGCTCAAGACCCTCGTTCGACACAGGCACTGAGTGCCACAACGTCCTCCAAGCCCTCCACCTTGTCCAATCCGATTACCTCCGTCGCGAAGGCCTCTTCGTCCCTCCCTCCACCGCCTCTGAGACATGCTGGGCTTCCTTCCAATCCTTCATCAACAAGTATGAACCTAACTTGGATATCCGCTCCTTCTGTGGCTTCCAAACCTCATGGATCTCAGAAGGATGCATGAACCTCACCAGCAGACAAGAGTTCGAAGCACAAGTTCCTTCCACCGCCCTTCAATCTGTGCAGAATAATTGCAATCAGTCCCTTCTGAACAACGCCCCGTGTGCCTTATGCACAACCACCTTGTCCAACTTGCAATCCTATTTGACCGGCCCCACTGTTGGTAACGTCTCTGATTGCAGGGCTTATTCCTCTATCTATGCTGCTTCTCTCTACGATCCCACCGACCCTGGTACTGCCAATTGCTTGTTCGGCCTTGAATTTTCCACTTCCTCTTCCCGTTCTAAAACTAGAACCATCGTCATTGTTCTTGTTTCCGTTCTTTTTGCTTTGTTCGTTGTTGCTGGTTTTTTGGGTTACTTGAGATTCAAGAATAAAAAGAACAACAAAAAGGGTAGTATGAATATAACTGAAACGGGTCAAAGTTCTAGGTTGGATTCCATGAGTCAGAGTACCACTTTGATTAGGTTCACCTTTGATGAAATTAAGAAAGCAACTAGGAACTTCTCAAGGGATAATATAATTGGGAGTGGTGGTTATGGGAATGTTTATAAAGGCTTGTTCTTAGATGGGACTCAAGTTGCCTTCAAGAGATTCAAGAATTGTTCTGTTGCTGGGGATGCCAGCTTCACTCATGAAGTTGAGGTTATTGCAAGTGTTAGGCATGTCAACCTTGTTACTTTGAGAGGCTATTGCACTGCTACCACTAAATTTGAAGGTCACCAGAGGATTATTGTTACTGATTTGATGGAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCCTCCACCCAGAAACTCACTTGGCTAATGCGTCAAAAGATTGCTCTAGGCACCGCTCGGGGGTTGGCTTATTTGCATTATGGGGCTCAACCTTCCATCATCCATAGGGATATTAAAGCTAGTAACATACTTCTTGATGACAAGTTTGAGGCCAAGGTAGCAGACTTTGGACTAGCAAAGTTCAACCCGGAGGGAATGACACATATGAGCACTAGAGTGGCTGGAACAATGGGGTATGTTGCTCCCGAGTATGCTTTGTATGGCCAGTTGACAGAGAGAAGTGATGTCTTCAGTTTCGGAGTTGTGCTTCTTGAGCTTTTAAGTGGGAAGAAGGCTCTTCAAACGGATAACGATGGCCAACCCACTGCCCTAACTGATTTGGCTTGGTCATTAGTTAAAAACAGTAGAGCTTTGGATGTTATTGAAGATGATATGCCTGAACGAGGTCCACCACAAGTCCTTGAGAAGTATGTGCTGGTTGCTGTACTATGCTCTCATCCACAGTTATATGCCAGACCAACAATGGATCAGGTTGTTAAAATGCTAGAGACAGATGAATCAGTACCCTCAATACTAGAACGCCCAATTCCTTTCATTGCTGACAGGATTGTTATTGAGAAATCTGTCAGCAGTAACTCGGGACAGTTGTCCAGTCCAACTGGCTATCAAGCATATACATTACAGAGTTCCCGCCTTTCTAATTCAAAGGAAGAAGAAGGAAGCTTGGAGTCTGGGACTGTGAGCACCAATGGGGATGAGAAGCAGTCAAACCCTTGCTTCATAATATGGCTCATGAGATTAACCTATTATTGTTTAGTACAGTACAAAACTAATTTTGGAAATGTGGTACGTACCTTCATTCTTTATGCTGCAACCAATGCACTAGCCATATTAATTATAGTTGTAGCTGTGCCAGAAATAAAAAGGGAAAAGCCTGGAACAATTACAAGCAACCATTAA 2070 0.4425 MSSFLIYLLSIFFLVNPCLSTCPLNTTVLTVVVGGSRPSFDTGTECHNVLQALHLVQSDYLRREGLFVPPSTASETCWASFQSFINKYEPNLDIRSFCGFQTSWISEGCMNLTSRQEFEAQVPSTALQSVQNNCNQSLLNNAPCALCTTTLSNLQSYLTGPTVGNVSDCRAYSSIYAASLYDPTDPGTANCLFGLEFSTSSSRSKTRTIVIVLVSVLFALFVVAGFLGYLRFKNKKNNKKGSMNITETGQSSRLDSMSQSTTLIRFTFDEIKKATRNFSRDNIIGSGGYGNVYKGLFLDGTQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTKFEGHQRIIVTDLMENGSLHDHLFGSSTQKLTWLMRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQTDNDGQPTALTDLAWSLVKNSRALDVIEDDMPERGPPQVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSILERPIPFIADRIVIEKSVSSNSGQLSSPTGYQAYTLQSSRLSNSKEEEGSLESGTVSTNGDEKQSNPCFIIWLMRLTYYCLVQYKTNFGNVVRTFILYAATNALAILIIVVAVPEIKREKPGTITSNH 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1940 689 Pfam SPARK 20 169 IPR043891 -
Lal1g1940 689 SUPERFAMILY Protein kinase-like (PK-like) 252 553 IPR011009 -
Lal1g1940 689 CDD STKc_IRAK 284 553 - -
Lal1g1940 689 Pfam Protein tyrosine and serine/threonine kinase 281 552 IPR001245 GO:0004672|GO:0006468
Lal1g1940 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Lal1g1940 689 ProSiteProfiles Protein kinase domain profile. 278 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1940 689 Gene3D Phosphorylase Kinase; domain 1 238 357 - -
Lal1g1940 689 PANTHER OS01G0253100 PROTEIN 18 605 IPR045271 GO:0004714|GO:0006468
Lal1g1940 689 Gene3D Transferase(Phosphotransferase) domain 1 359 561 - -
Lal1g1940 689 MobiDBLite consensus disorder prediction 603 623 - -
Lal1g1940 689 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 18 605 - -
Lal1g1940 689 SMART serkin_6 278 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1940 689 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1940 Lal-Chr1 21524105 21526959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1940 20 597 Receptor kinase-like Gene Family AT2G48010 62.692 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lal1g1940 PK_Tyr_Ser-Thr 6.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1940 - - gmx:100786298 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1940 1 21524105 21526959 Lal1g1940 1 21524105 21526959 ECH
Lal24g0174 24 1269419 1271653 Lal1g1940 1 21524105 21526959 ECH
Lal1g1940 1 21524105 21526959 Lal12g0230 12 1627133 1629025 PCT
Lal1g1940 1 21524105 21526959 Lal24g0174 24 1269419 1271653 PCT
Lal12g0230 12 1627133 1629025 Lal1g1940 1 21524105 21526959 PCT
Lal24g0174 24 1269419 1271653 Lal1g1940 1 21524105 21526959 PCT