Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1936 ATGGCTGCTACTGTTGCTCTCAGAAAGTCTTATACTTCTACAAGACTCCGTCTTTTGTATTCTTCTTCTTTTTCTAAATATGTCTCTTCTTCCATTCCCAATTCCAATTCCAATTTCATTCCTTCGTGGTGGACCAGATCCATGGCCACTTTCACTAGAACAAAACCTCACGTTAATGTTGGAACTATTGGACATGTTGATCACGGCAAGACTACCCTCACTGCTGCTATTACCAGAGTGCTAGCAGATGAAGGAAAAGCAAAAGCTATAGCCTTTGATGAAATTGATAAGGCTCCAGAAGAGAGGAAGAGAGGAATCACTATTGCTACAGCCCATGTTGAATATGAGACTGCCAAACGACACTATGCACATGTTGATTGCCCTGGACATGCCGATTATGTTAAAAATATGATTACAGGTGCTGCCCAAATGGATGGAGGTATACTGGTTGTATCTGCACCTGATGGACCCATGCCTCAAACAAAAGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTCTGCTTTTTGAATAAAGTTGATGCTGTCGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTCAGCTTCTACAAGTTCCCTGGAGATGAAATCCCAATCATCAGGGGTTCAGCATTGTCCGCTTTACAGGGTACAAATGAAGAGATTGGAAGAAATGCCATTCTTAAATTAATGGATGCTGTAGATGAATATATTCCGGACCCTGTTCGCCAGCTTGACAAACCTTTCCTAATGCCAATCGAAGATGTATTCTCAATTCAGGGACGAGGGACAGTGGCCACTGGCCGTGTTGAACAAGGGATCATCAAAGTTGGTGATGAAGTCGAGGTTTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACTACAGTAACTGGAGTTGAGATGTTCAAGAAAATTTTAGATCAAGGACAGGCAGGTGACAATGTTGGTCTTCTTCTTCGTGGTCTTAAGCGTGAGGACATTCAACGTGGACAGGTCATTGCCAAGCCCGGTTCTGTAAAAACATCCAAGAAATTTGAAGCAGAGATATATGTACTGACGAAGGATGAGGGTGGGCGGCACACTGCTTTCTTCTCTAACTATAAACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAATTGCCTGAAAATGTTAAGATGGTTATGCCTGGAGATAACGTTACTGCAGTGTTTGAATTGATTTCACCTGTTCCACTTGAAGCAGGACAAAGATTTGCTTTGAGAGAAGGAGGAAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAA 1332 0.4309 MAATVALRKSYTSTRLRLLYSSSFSKYVSSSIPNSNSNFIPSWWTRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAIAFDEIDKAPEERKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEIGRNAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELISPVPLEAGQRFALREGGRTVGAGVVSKVLS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1936 443 CDD EFTU_III 349 438 - -
Lal1g1936 443 Gene3D Translation factors 253 383 - -
Lal1g1936 443 PANTHER ELONGATION FACTOR TU 25 442 - -
Lal1g1936 443 Pfam Elongation factor Tu GTP binding domain 55 248 IPR000795 GO:0003924|GO:0005525
Lal1g1936 443 Hamap Elongation factor Tu [tuf]. 46 443 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal1g1936 443 CDD EF_Tu 56 250 IPR041709 -
Lal1g1936 443 Gene3D Translation factors 387 442 - -
Lal1g1936 443 SUPERFAMILY Translation proteins 252 348 IPR009000 -
Lal1g1936 443 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 55 251 IPR000795 GO:0003924|GO:0005525
Lal1g1936 443 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 352 442 IPR009001 -
Lal1g1936 443 CDD EFTU_II 258 346 IPR033720 -
Lal1g1936 443 Pfam Elongation factor Tu domain 2 272 342 IPR004161 GO:0005525
Lal1g1936 443 PANTHER ELONGATION FACTOR TU-RELATED 25 442 - -
Lal1g1936 443 TIGRFAM EF-Tu: translation elongation factor Tu 47 442 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal1g1936 443 TIGRFAM small_GTP: small GTP-binding protein domain 58 194 IPR005225 GO:0005525
Lal1g1936 443 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 96 111 IPR031157 -
Lal1g1936 443 PRINTS GTP-binding elongation factor signature 59 72 IPR000795 GO:0003924|GO:0005525
Lal1g1936 443 PRINTS GTP-binding elongation factor signature 103 111 IPR000795 GO:0003924|GO:0005525
Lal1g1936 443 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Lal1g1936 443 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Lal1g1936 443 PRINTS GTP-binding elongation factor signature 176 185 IPR000795 GO:0003924|GO:0005525
Lal1g1936 443 Gene3D - 47 250 IPR027417 -
Lal1g1936 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 273 IPR027417 -
Lal1g1936 443 Pfam Elongation factor Tu C-terminal domain 347 441 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1936 Lal-Chr1 21496304 21499813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1936 53 441 Eukaryotic Initiation Factors Gene Family AT5G60390 30.734 1.80e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1936 K02358 - gmx:100776891 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1936 1 21496304 21499813 Lal1g1936 1 21496304 21499813 ECH