Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1928 ATGGCTCCTTCAAGAACAAGTGTGAAGCGTAAGCTGGAAGAACAATTGGACAAGGAGAATGTAGAAAGATGTTCTAAAGTTGTGGTGCTTGATTCAGATCATGATGTCCTTCCTGATATTCATCGTCACGTCTCACTCCTCACTTCTTCTCACTCTTCCTCTCTCAACACCGCTCTTCTTTTTCTTTCCCAATTCGCCACTAATGAGGAGTTCGTTGATGCTATCATTGAAAGTGGTGCTGTTCCTCCTTTGGTCAAACACTTACATCAACAACAAGATCCAAGTATTAACAACCCTTACCGCTACGACGTCCTCACCAAATGTGCCTATATCCTTGGCCTTCTTGCTCTCAAGCCAGAGCATCAAGTGTTGATTCATAACGCTGGAGCATTACCACATCTTATAGATTTATTAAAAATGTGGGACTCTCGCAACTACACATTCTCTTTACGACTTCCTTCTCTTCTTAGGAGAGCAGCTGATGCAATAACCAATATTGCACATGAAAATAGCAACATCAAAAACTTTCTAAGGATCAAAGGTGCTATCCCTCCTCTTGTTCAATTGCTTGAATTTACCGACACAAAGGTACAAAGGGCAGCCACTGGAGCCTTGAGAACTCTTGCTTTTAAAAATCATGACAATAAGAAACAGATTATTTGCTGCAATGCATTGCCACCTCTTACAATATTGCTTCAATCAGAGGATCCTACACTGCATTATGAGGCTGTTGGTGTGATTGGAAATCTGGTCCACTCTTCTTCGCCCGAAATTAAAAAAGATGTTCTTCTAGCTGGGGTTTTGCAACCTGTCATTGGCTTACTTAGTTCCACCTGTTCGGAGAGTCAAAGAGAAGCTGCTCTCTTAATTGGCCAATTTGCTACAATAGACTCAGATTGCAAGAATCATATTGCACAAAGAGGAGGCATTAAACCATTAGTTGACATGCTCAAGTCCTCAGACGCACACGTTAAGGAAATGTCAGCATTTGCACTTGGGAGGTTGGCACAGAACTCGCACAATCAAGCTGGTATTGCTCATAATGGAGGTATAGAGCCTCTACTCAGTCTTCTTGGCTCAAAGAATGGGGCCATCCAACACAATGCAGCTTTTGCTCTCTATGGTCTTGCTGATAATGAGGACAATGTTGCAAGTATTATTAAGGCTGGGGGTTTTCAAAAATTGCAGGAAGGATATTTCAGAGCTCAACCTACGAAAGAGTGTGTGGAAAAGACATTAAAAAGATTAGAGGAGAAGATGCATGGACTAGTACTGAGACATGTGCTATATCTTATGCGATTTGCAGAAAAGAGCATCCAAATTCGTATAGCTCTTGCCCTTGCTCATCTTTGTTCTGATAATAACCGTAAATCCATTTTCATTGAAAATAATGGATTAGACTTGCTACTGGATCTTCTTGAATCTAGCTCTCCAAAGCAGAGGTGTGATGCTGCAGCAGCACTTTATAAGTTGGCTACCAAAACCACATCCTCTCCTCTTGTTGATGCTGCTCCTCCATCACCAACTCTTCAGGTGTACTTGGGCGAGCAATATATAAACAATCCTAAAGATTCTGATGTCACATTCTTGGTTGAAGGTAAAAGGTTCTATGCTCATAGAAAGTGTTTACGTGCATCTTCTGATACGTTCCGTGCAATGCTTGATGGTGGTTATAGGGAAAGAGAAGGCAAAGACATAGAGATTCCAAATATTAACTGGGGTGTCTTTGAGTTGATGATGAGGTATATATACACTGGAGCAGTGGATGTCAATTTGAATATTGCTCATGATCTCCTCAGAGCCGCTGATCAGTATCTTATTGAGGGTCTTAAGCGTCTTTGCGAATATGCTATTTCTCAGGATATCTCCATGGATAACATTTTCGACATGTATAATATATCACAGCCTTTCAATGCTACGTCGTTAAGACATGCATGCATACTGTTTATGTTGGAGCATTATGAAAAATTACGAACCGAACCACGGTTTTGCGGTTTGGTTCACTGCACCATACCAGACATACGCCAATTATTTTCAACCTTACTTACCAAGTCCTATTCGGCTGATTCGTGA 2073 0.412 MAPSRTSVKRKLEEQLDKENVERCSKVVVLDSDHDVLPDIHRHVSLLTSSHSSSLNTALLFLSQFATNEEFVDAIIESGAVPPLVKHLHQQQDPSINNPYRYDVLTKCAYILGLLALKPEHQVLIHNAGALPHLIDLLKMWDSRNYTFSLRLPSLLRRAADAITNIAHENSNIKNFLRIKGAIPPLVQLLEFTDTKVQRAATGALRTLAFKNHDNKKQIICCNALPPLTILLQSEDPTLHYEAVGVIGNLVHSSSPEIKKDVLLAGVLQPVIGLLSSTCSESQREAALLIGQFATIDSDCKNHIAQRGGIKPLVDMLKSSDAHVKEMSAFALGRLAQNSHNQAGIAHNGGIEPLLSLLGSKNGAIQHNAAFALYGLADNEDNVASIIKAGGFQKLQEGYFRAQPTKECVEKTLKRLEEKMHGLVLRHVLYLMRFAEKSIQIRIALALAHLCSDNNRKSIFIENNGLDLLLDLLESSSPKQRCDAAAALYKLATKTTSSPLVDAAPPSPTLQVYLGEQYINNPKDSDVTFLVEGKRFYAHRKCLRASSDTFRAMLDGGYREREGKDIEIPNINWGVFELMMRYIYTGAVDVNLNIAHDLLRAADQYLIEGLKRLCEYAISQDISMDNIFDMYNISQPFNATSLRHACILFMLEHYEKLRTEPRFCGLVHCTIPDIRQLFSTLLTKSYSADS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1928 690 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 4 690 - -
Lal1g1928 690 SMART arm_5 118 168 IPR000225 GO:0005515
Lal1g1928 690 SMART arm_5 453 493 IPR000225 GO:0005515
Lal1g1928 690 SMART arm_5 68 117 IPR000225 GO:0005515
Lal1g1928 690 SMART arm_5 212 252 IPR000225 GO:0005515
Lal1g1928 690 SMART arm_5 297 337 IPR000225 GO:0005515
Lal1g1928 690 SMART arm_5 338 378 IPR000225 GO:0005515
Lal1g1928 690 SMART arm_5 255 295 IPR000225 GO:0005515
Lal1g1928 690 SMART arm_5 170 210 IPR000225 GO:0005515
Lal1g1928 690 Pfam Armadillo/beta-catenin-like repeat 212 251 IPR000225 GO:0005515
Lal1g1928 690 Pfam Armadillo/beta-catenin-like repeat 179 209 IPR000225 GO:0005515
Lal1g1928 690 Pfam Armadillo/beta-catenin-like repeat 68 96 IPR000225 GO:0005515
Lal1g1928 690 Pfam Armadillo/beta-catenin-like repeat 297 336 IPR000225 GO:0005515
Lal1g1928 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 181 IPR000225 GO:0005515
Lal1g1928 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515
Lal1g1928 690 Coils Coil 406 426 - -
Lal1g1928 690 SUPERFAMILY POZ domain 517 621 IPR011333 -
Lal1g1928 690 Gene3D Potassium Channel Kv1.1; Chain A 516 660 IPR011333 -
Lal1g1928 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 216 IPR000225 GO:0005515
Lal1g1928 690 SUPERFAMILY ARM repeat 37 491 IPR016024 -
Lal1g1928 690 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 690 IPR044282 -
Lal1g1928 690 Gene3D - 259 417 IPR011989 -
Lal1g1928 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 350 IPR000225 GO:0005515
Lal1g1928 690 Gene3D - 38 258 IPR011989 -
Lal1g1928 690 ProSiteProfiles BTB domain profile. 525 592 IPR000210 GO:0005515
Lal1g1928 690 SMART BTB_4 525 622 IPR000210 GO:0005515
Lal1g1928 690 Gene3D - 418 503 IPR011989 -
Lal1g1928 690 Pfam BTB/POZ domain 518 620 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1928 Lal-Chr1 21451059 21461370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1928 240 493 U-box Gene Family AT5G67340 26.217 6.88e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal1g1928 BTB 2.5e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1928 - - qsu:112036025 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1928 1 21451059 21461370 Lal1g1928 1 21451059 21461370 ECH