Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1918 TTTTTTCTTTTGTTGCAGGATAGTAAGATTGAAGTGATTTTAGTTAAAATGGATCAGTATGAAATTCTAGAACAGATTGGTAAAGGTTCCTTTGGTAATGCTCTGCTTGTGAGACACAAGCACGAGAATAAAAAGTATGTTCTCAAGAAGATTCGCCTTGCTCGCCAGACTGACAGAACTCGTACGTCTGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAATACAAAGACTCATGGGTAGAAAAGGGTTGTTTTGTATGCATCATCATCGGCTATTGTGAAAGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAAAAACTTTGTAAGTGGCTTGTTCAACTACTGATGGCGCTCGATTACTTACATGTAAATCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGACCACAATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAATTGTTGGGACTCCAACTCATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATTTGGTCTTTGGGATGCTGTATTTATGAAATGGCAGCTCACAAGCCTGCTTTTAAAGCTTTTGATATGCAATCATTGATTATCAGAATACACAAGTCCATGGTGGCTCCACTGCCAGCTATGTATTCTCGCGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGAAAAAATCCTGAGCTTAGGCCTACGGCTGTGGAGTTATTAAACCATCCACATCTTCAACCATACATTCTTCAAATTCACCTAAAATTAAATAGCCCTCCAAGAAGTACTTTTCCATTTCAATGGCCTGAAACAAACTCCCTAAGGAGAACTCAATTCGTAGAGGAAGAATCTGATTCTACTCTCTCTGGCCTAGACAAATGCTCGTTGTTAAGCAATGATAGGGCCTTAAATCCTAGTATTTCTGGAAATGAACAAGGTTCTCAGTGTTCTACTCAAAGAGTAAATGGATTAGCCATTTTTACTAAAGAGAAGGTTTATGAATTACCTGTTGGTTGTGTTCATGATGAAAGAAATACTAACAAATCAATAGCTATCAAGTCTTTAACTGTTGATAAAACACCAAGATTGAGAACAGATACAGATTATGCCACCCCTAGAAAGCTGACAAAGGCAAAATCGAAGACATCTCGTACAAGTTTGAAGCGTGATTCACTTCCAGTGTCTCATAAACCAACCAGAAAATTTTCCCCATCAAAGAGCCAAGTAGGCCTTCCAACAACCACTTACAGATCCAATGTTGGTCTCTTTCAAAATGTGAAATCTCCTAATGTTTCTGTTAATCCACCGGGAATAGACAAGATTCAAGAACTTCCTCTGGCCTCTTGTGAGGACCCTTTCTTGAGTTTCTTCACTATCCAAGAACCATCATTAACATCAGCAAAATGCTCTTCTAGTTCAACAAAGAGTGCTGACTCTTCAATCACAAAGGACAAGTGCACAATCCAGAAAAGAGTTGTTGTCCATAGCAGTGGCAATGGTGGTTGTCCAAAGGTGAGTGAATGTTGGGAGTTGCATCAGTCTCCATTTGACACGTCGTCGTACCAACAACGCGCTGAGGCATTGGAAGGGTTGCTGGAGTTCAGTGCCAGGCTCCTAAAACATAGGAGGTTTGAAGAGCTTGGAGTATTGTTGAAGCCATTTGGAGCTGAGAAAGTTTCTTCAAGAGAAACAGCTATTTGGTTGACCAAGAGCTTCAGAGAAACTGTGCTCTGA 1821 0.4003 FFLLLQDSKIEVILVKMDQYEILEQIGKGSFGNALLVRHKHENKKYVLKKIRLARQTDRTRTSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCERGDMAEAIKKANGVHFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHNIRLGDFGLAKMLTSDDLASSIVGTPTHMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDMQSLIIRIHKSMVAPLPAMYSRAFRGLVKSMLRKNPELRPTAVELLNHPHLQPYILQIHLKLNSPPRSTFPFQWPETNSLRRTQFVEEESDSTLSGLDKCSLLSNDRALNPSISGNEQGSQCSTQRVNGLAIFTKEKVYELPVGCVHDERNTNKSIAIKSLTVDKTPRLRTDTDYATPRKLTKAKSKTSRTSLKRDSLPVSHKPTRKFSPSKSQVGLPTTTYRSNVGLFQNVKSPNVSVNPPGIDKIQELPLASCEDPFLSFFTIQEPSLTSAKCSSSSTKSADSSITKDKCTIQKRVVVHSSGNGGCPKVSECWELHQSPFDTSSYQQRAEALEGLLEFSARLLKHRRFEELGVLLKPFGAEKVSSRETAIWLTKSFRETVL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1918 606 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Lal1g1918 606 CDD STKc_Nek 19 274 - -
Lal1g1918 606 PANTHER SERINE/THREONINE-KINASE NEK4 17 595 - -
Lal1g1918 606 Pfam Protein kinase domain 20 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1918 606 Gene3D Transferase(Phosphotransferase) domain 1 100 285 - -
Lal1g1918 606 SUPERFAMILY Protein kinase-like (PK-like) 17 328 IPR011009 -
Lal1g1918 606 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 17 595 - -
Lal1g1918 606 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1918 606 MobiDBLite consensus disorder prediction 393 439 - -
Lal1g1918 606 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1918 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lal1g1918 606 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1918 Lal-Chr1 21406387 21411438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1918 26 291 MAP Kinase Kinase Kinase AT1G53570 30.769 6.40e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal1g1918 Pkinase 2.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1918 K08857 - gmx:100805201 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1918 1 21406387 21411438 Lal1g1918 1 21406387 21411438 ECH