Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1909 ATGGACACTCACTCTCACGGCGGTGCCGGAAACCTTCGTTCCCGGAGCTCCCAATCCCAATCCCCTTCTCACTCCGCCACCTCCTCCATCCACAAGCGTAAAATCCCTTCCTCATTCGACGCCACCGTCACAACCAACGACGACCTCGATAGCATATCCGCCCGCGCCAATCACTCCGACGATGATTCTGAAGAAGACGCCGTCGTTGATGATTATGAGGATAACCTCGATCAGGACAACGGTTCCTCGATGCGCACCTTCACCGCCGCAAGACTCGATAATAACACTAACAACAACAACCCTAGTTCCGCTCCGAGGAATAGTAAGCTGAAGAGCGATAATAATAACAATAATTCTGCTGTTAAGATTGAGAATTCTGATTCCGCCACCGCCAAAGATGGTGGCGGCGGTGGCTCCGGGGGTTCCGTACCAGGGATTGTGGTTAAAGAGGATGCGGCGATGATATTTACTGATAATTTACAGACCAGTGGGGCTTACACTGCTAGGGAAGAGAGTCTTAAGAAAGAGGAGGAAGCAGGGAGGCTCAAATTTGTATGCCATTCGAATGACGGTATTGACGATCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCAAACATGCCTAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTCATAAGACATAATCACGTCGTGGGAGGCATTACATATCGCCCATATGTAACCCAGAAGTTTGGTGAGATAGCCTTCTGTGCAATAACAGCTGATGAGCAAGTAAAAGGTTATGGTACCAGATTGATGAATCACTTGAAACAGTATGCGCGTGATTTAGATGGGTTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGTTATTTTATCAAACAGGGATTTACGAAAGAGATTTACTTGGACAAAGATCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTAATGGAATGCAAGATTGATCCAAAGCTTCCTTACACTGATTTGTCAACTATGATTCGCCGACAAAGGCAGGCAATTGATGAAAAGATCAGAGAGCTGTCAAACTGTCATATTGTTTATCCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCAAAAAAAATTATCAAAGACATCCCTGGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGTTTCAGAACTTTAACTTCAATGCATGATCATGCTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTTCCAGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGAGTAAGAGGGTGGAGTCAGAGCAATATTATGTCACATTTGAGATGTTTGTCGCGGATGTCAGAAGAATGTTTTCGAATGCACGCACTTACAACTCTCCAGAAACCATTTACTACAAATGTTCTACAAGGCATGAAGCCCATTTTCACAGCAAAGTGGCATTGGGACTACAATCTGGTACCAAAATCCAATAG 1527 0.4381 MDTHSHGGAGNLRSRSSQSQSPSHSATSSIHKRKIPSSFDATVTTNDDLDSISARANHSDDDSEEDAVVDDYEDNLDQDNGSSMRTFTAARLDNNTNNNNPSSAPRNSKLKSDNNNNNSAVKIENSDSATAKDGGGGGSGGSVPGIVVKEDAAMIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCHSNDGIDDHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRHNHVVGGITYRPYVTQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDLDGLTHFLTYADNNAVGYFIKQGFTKEIYLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIIKDIPGEAGWTPDQWGHSRFRTLTSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADVRRMFSNARTYNSPETIYYKCSTRHEAHFHSKVALGLQSGTKIQ 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1909 508 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 198 336 IPR016181 -
Lal1g1909 508 MobiDBLite consensus disorder prediction 1 143 - -
Lal1g1909 508 Pfam Bromodomain 411 487 IPR001487 GO:0005515
Lal1g1909 508 Gene3D - 382 503 IPR036427 GO:0005515
Lal1g1909 508 SMART bromo_6 337 502 IPR001487 GO:0005515
Lal1g1909 508 CDD Bromo_gcn5_like 406 497 - -
Lal1g1909 508 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 190 336 IPR000182 GO:0016407
Lal1g1909 508 SUPERFAMILY Bromodomain 389 498 IPR036427 GO:0005515
Lal1g1909 508 Pfam Acetyltransferase (GNAT) family 229 307 IPR000182 GO:0016407
Lal1g1909 508 PANTHER BNAC04G26160D PROTEIN 408 508 - -
Lal1g1909 508 PANTHER BNAC04G26160D PROTEIN 1 407 - -
Lal1g1909 508 ProSitePatterns Bromodomain signature. 417 475 IPR018359 -
Lal1g1909 508 Gene3D - 178 342 - -
Lal1g1909 508 ProSiteProfiles Bromodomain profile. 412 483 IPR001487 GO:0005515
Lal1g1909 508 CDD NAT_SF 229 284 - -
Lal1g1909 508 PANTHER GH11602P 408 508 IPR037800 GO:0004402
Lal1g1909 508 PANTHER GH11602P 1 407 IPR037800 GO:0004402
Lal1g1909 508 MobiDBLite consensus disorder prediction 63 77 - -
Lal1g1909 508 MobiDBLite consensus disorder prediction 79 126 - -
Lal1g1909 508 MobiDBLite consensus disorder prediction 9 52 - -
Lal1g1909 508 PRINTS Bromodomain signature 415 428 IPR001487 GO:0005515
Lal1g1909 508 PRINTS Bromodomain signature 429 445 IPR001487 GO:0005515
Lal1g1909 508 PRINTS Bromodomain signature 464 483 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1909 Lal-Chr1 21313578 21321218 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lal1g1909 Bromodomain 5.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1909 K06062 - gmx:100791610 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1909 1 21313578 21321218 Lal20g0011 20 110576 119274 LSH