Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1906 ATGACAAATCAGATAGTGAAAGTGAGAAGAGACAAGATTGTAGCATGCATGACTTGTACTATTTGTAACAATCTCTTCAAAGATGCTACCACTATATCTGAATGTCTTCACACGAAGTGCATTTGTGATAAAATTACAGATGAGGAATTGGAATGCTGTCCCATATGCAACATTGATTTGGGTTGTGTTCCGCTCGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGTCCAAAATTTTCCCCTTAAAGGGAAGAAAGGCAAAGGCACCTGAAGTTATCCCTTCCGAAACGTTAACATCAAGACGAAAGGAAAGATCTCTTTCATCTTTAGTGGTTAACATTCCAACGGTATCATCTTCACAGGTAACCATGACAGGAAGAAGAACAAAACCTACCAGAAAGGCTAGCAATCTTCGTGCCTCTAGTTTTTCCATCGAAAATGCGATTAAAAAAGAGGAAGAGTTACTCGGAGATCATTCAGAGAGTTCAAACTCACATGAGTCTTCAAGTAAATTTGCTGAGAATACTGGACAGAGTCTGTCCCCTTGTGAGGGTAGTCAATCCATACCAAATAAAGAAACCGAGAATGGTGCTGAACCATGGGATGCAAAATTGGATCTTTGGAAACCATTGAATTGCTTAGTAGAGGTTGCAAGTAGGACCAAATCTTTCAAGTCTACCGTGCAAGGATTGGATGCTAAACAAGAGCCTCTTCAAGCAAATGAAAGTGACCCACAAGTGAAGAAAACCAAAAATAAGGAAAATAAACGCAAAGCGAAAGTTGAGAATGAAAATATTAGCACTAAATCTGTGTCTCCAGATACAGCAAAACCGAAAAAATTGCGCAGAATTCGCCGGAAAAAGGAACCCGATTTTGGAGAATCAGGCATAACACCGCAGGCTGTGCTGGATTCGAACTGCACTAAACTCTTGCGGAATGGTCCTATTTGGTTTTCCTTAGTAGCTTCAGAAAATCAGGAAGGAGATGCACCCTTGCCTCAAATTCCTTCAGCTTTTGTGAGAATAAAGGATGGAAGTATACCTGTCTCATTTATCCAAAAATACTTAATGAAGAAACTAGAGCTGAACAGTGAAGCTGAGGTGGAGATTAAATGCATGGGACAAACAGTGTTACCAACACTTCAGCTACATAATTTGGTTGAGTTATGGCTTCAAACAACATCTTCCACATTACACAGAATTCCAGCAACAATTGGGTCCACAGCAAAGGACTTTGTAATGGTCTTGGCCTATGCTAGGAAGTTACCTCACCCTTCAAACTCACAATTCTAA 1299 0.4018 MTNQIVKVRRDKIVACMTCTICNNLFKDATTISECLHTKCICDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRSKIFPLKGRKAKAPEVIPSETLTSRRKERSLSSLVVNIPTVSSSQVTMTGRRTKPTRKASNLRASSFSIENAIKKEEELLGDHSESSNSHESSSKFAENTGQSLSPCEGSQSIPNKETENGAEPWDAKLDLWKPLNCLVEVASRTKSFKSTVQGLDAKQEPLQANESDPQVKKTKNKENKRKAKVENENISTKSVSPDTAKPKKLRRIRRKKEPDFGESGITPQAVLDSNCTKLLRNGPIWFSLVASENQEGDAPLPQIPSAFVRIKDGSIPVSFIQKYLMKKLELNSEAEVEIKCMGQTVLPTLQLHNLVELWLQTTSSTLHRIPATIGSTAKDFVMVLAYARKLPHPSNSQF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1906 432 MobiDBLite consensus disorder prediction 168 196 - -
Lal1g1906 432 MobiDBLite consensus disorder prediction 231 247 - -
Lal1g1906 432 MobiDBLite consensus disorder prediction 121 141 - -
Lal1g1906 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Lal1g1906 432 MobiDBLite consensus disorder prediction 248 266 - -
Lal1g1906 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 423 - -
Lal1g1906 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 423 IPR044807 GO:0004842
Lal1g1906 432 MobiDBLite consensus disorder prediction 231 299 - -
Lal1g1906 432 MobiDBLite consensus disorder prediction 157 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1906 Lal-Chr1 21282004 21293960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1906 3 345 C3H Transcription Factor Family AT2G30580 50.716 4.46e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1906 K16277 - gmx:100793731 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1906 1 21282004 21293960 Lal13g0707 13 4600322 4605169 ECH
Lal1g1906 1 21282004 21293960 Lal24g0542 24 3824981 3829648 ECH
Lal1g1906 1 21282004 21293960 Lal1g1906 1 21282004 21293960 ECH
Lal24g0628 24 4611273 4613190 Lal1g1906 1 21282004 21293960 ECH
Lal12g0708 12 5341956 5343928 Lal1g1906 1 21282004 21293960 ECH
Lal1g1906 1 21282004 21293960 Lal13g0153 13 981496 983415 PCT
Lal13g0153 13 981496 983415 Lal1g1906 1 21282004 21293960 PCT