Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1903 ATGGCGTCTGAAGAGCCCATCGTTGAAGTTCAGCCCTCACCGGAAGTGGAGGCGTCACTAGCCACCGACAACAACACCACCGCCGCCGCCGCCGCTGACCAACCCGCCGACGAGACAACTGAGCCTGAGGCCAAGCCCGCTGCCAAGCCCAAGAAAGCTGCTAAGGAGCCCAAGCCCAAGAAGCCCGCTGCTCCTCGCAAACCTAAGACCTCTTCTCACCCTACTTATGAAGAGATGATTAAGGATGCGATTGTTTCTCTGAAAGAGAGAACTGGTTCGAGTCAATATGCTATAGCGAAGTTTCTAGAAGAGAAGCATAAGAACCTTCCATCCAACTTCAAGAAGCTTCTATTGAACCAACTCAAGAAGCTTGTTGCTTCTCACAAACTCGTTCAGGTCAAGCATTCCTTCAAGCTTCCACCTCTCAGAGCTGCTTCCGTTCCAAAGCCCGTCGTTGCTAAGCCTAAGCCCGTTGCTGCTAAGCCCAAGCCTGCTGCCAAGGCTAAGCCTGTTGCTAAGGCCAAGCCTGCTCCTAAGCCCGCTGCTAAGGCTAAGCCTGTTGCTAAGGCTAAGCCCGCTGCAAAGGGGAAAGCTGTTGTGAAGGCGAAGCCTGCTGCTAAGCCCAAGCCCGCTGCTAGGCCCGCCAAGGCTTCTAGGACATCGACCAGGACTTCTCCTGCTGGGAGGAAGGCACCTGCTCCGAGACCAGCACCGGCGAAGAAAGCTGCTGCGATGAAGAAGGCTGCGCCAGCGAAAAAGGCTACTCCAGTGAAGAAAGCTACCCCGGCGAAGAAAGCTGCTCCGGCGAAGAAGGCTGCCCCGGCGAAGAAAGCTGCTCCGGTGAAGAAGGCTGCTCCGGCGAAGAGGGCAGGGCCAAAGAGGGGAGGAAGAAAGTGA 897 0.5608 MASEEPIVEVQPSPEVEASLATDNNTTAAAAADQPADETTEPEAKPAAKPKKAAKEPKPKKPAAPRKPKTSSHPTYEEMIKDAIVSLKERTGSSQYAIAKFLEEKHKNLPSNFKKLLLNQLKKLVASHKLVQVKHSFKLPPLRAASVPKPVVAKPKPVAAKPKPAAKAKPVAKAKPAPKPAAKAKPVAKAKPAAKGKAVVKAKPAAKPKPAARPAKASRTSTRTSPAGRKAPAPRPAPAKKAAAMKKAAPAKKATPVKKATPAKKAAPAKKAAPAKKAAPVKKAAPAKRAGPKRGGRK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1903 298 Pfam linker histone H1 and H5 family 73 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal1g1903 298 SUPERFAMILY "Winged helix" DNA-binding domain 69 146 IPR036390 -
Lal1g1903 298 CDD H15 70 145 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal1g1903 298 PRINTS Histone H5 signature 59 80 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal1g1903 298 PRINTS Histone H5 signature 86 103 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal1g1903 298 PRINTS Histone H5 signature 169 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal1g1903 298 PRINTS Histone H5 signature 207 224 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal1g1903 298 PRINTS Histone H5 signature 229 248 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal1g1903 298 PANTHER HISTONE H1 23 272 - -
Lal1g1903 298 MobiDBLite consensus disorder prediction 38 63 - -
Lal1g1903 298 MobiDBLite consensus disorder prediction 1 78 - -
Lal1g1903 298 SMART h15plus2 70 136 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal1g1903 298 PANTHER HISTONE H1.1 23 272 - -
Lal1g1903 298 MobiDBLite consensus disorder prediction 154 298 - -
Lal1g1903 298 MobiDBLite consensus disorder prediction 17 33 - -
Lal1g1903 298 Gene3D - 68 150 IPR036388 -
Lal1g1903 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 72 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1903 Lal-Chr1 21263837 21265284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1903 69 140 Single Myb Histone (SMH) Gene Family AT1G72740 31.944 1.20e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1903 K11275 - rcu:8274745 126.331