Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1897 ATGGGTGGTGATGGTGAGAGGTTTTGTGAGAAAGAAGAAGGTAAGGTTATGCTGGAATCTGTGGTGGGAGCTGAAGCTGTTGCCTTTTTCAGTTCTGCACTTTCCAGTGATGTTTATTCTGATGTTATTGTTCCGCCGAGTCTTGAATCGAATGTTAAACTGCGGTTGCGCCACCTTGTTGAGGTGTCCAAGTGGGATTATGCCATTTTGTGGCAGGTTGTTGGTTTGAAATCTGGTGGCTATGCCCTAAAATGGGGTGATGGGTACTGTCAGGATCGTAAGGAAGGTGAAAGGAATGAGCCGAAAGAGGAGGATGAGGCGAAGAAGCGGCATGTGTTGCAGAAGCTTCATGAAGAATGTGGTGGATCTGAATCGAAAGAATCGAAAGAGGCCAATTATGGAAGTTTGGACAGGGTTTCGGATATGCAAATGTTTTATTTGATCTCAATGTATTATGTGTTTGGTTTCAATTCTCAGTGTGGCCCTGGTAGTTCCTTCAAGTCAGGTAAATCTATTTGGGCTTCTGATGCTGTTAGTTGTTTGAACCAATATGAATCGAGATCATTTCTTGGGAAATTGGCTGGTTTGAAGACGGTTGTTTTTGTGCCTATGAAGGCTGGGGTTATTGAGATTGGTTCAATGGAAATGATTCCTGAAGAGCAGAGTGTTTTGGAAATGGTTAAAACAATGTTTGACGAATCTAGTTTTGGACAGGCAAAGATGTTACCGAAGATTTTCGGGCGTGAATTAAGCTTGGGGGACCCGAAATCTCAGTCCATGACTATTAGTTTCTCCCCGAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTTTGAACCACAAGCAATGGTGGCAAACCATGCTTATGGAAATTCTTCCAACAGGTGTGTAGGCGATAATAGCGAAGCAAAATTGTTCCCTCAGTTTGGGAACTTTAATTCTCACGGACGGGTTTCGTCTGTAGACCTTGGTAACGATGATGCATCGTCGCCTCAAGCAGATGAGAGGAAGCCAAGGAAGAGAGGGAGAAAGCCGGCAAATGGGAGAGAGGAAGCATTGAATCATGTGGAAGCGGAGAGACAAAGACGAGAAAAGCTAAACCAAAGGTTCTATGCCTTAAGAGCTGTTGTTCCGAATATATCTAAGATGGACAAGGCGTCTCTTCTCGGAGATGCTATTACTCATATCACCGATCTCCAAAAGAAGATAAGGGTGTTGGAGTCTGAAAAAGGCATGAATGACAACAATAAGGACCAGTTGCCTTTGCCGGATATTGATTTTCAGGCTAGAAAGGACGATGGAGTCGTGACGGTGAGCTTCCCCTTAGATATGCATCCAGTTTCTGGAGTTGTTAAAGCCTTCAGGGAGCATCAAATTGTACCTGAAGAGTCCACTGTCTCAACCGCGCAGGATAAGGTGATTCATACATTCTCTATAAGAACTCAAGGTGGTGAAGCTGCTGCTAAAATGTTGAAAGAAAAGCTTGAAGCATCTCTGTTCAAAAATTGA 1512 0.4372 MGGDGERFCEKEEGKVMLESVVGAEAVAFFSSALSSDVYSDVIVPPSLESNVKLRLRHLVEVSKWDYAILWQVVGLKSGGYALKWGDGYCQDRKEGERNEPKEEDEAKKRHVLQKLHEECGGSESKESKEANYGSLDRVSDMQMFYLISMYYVFGFNSQCGPGSSFKSGKSIWASDAVSCLNQYESRSFLGKLAGLKTVVFVPMKAGVIEIGSMEMIPEEQSVLEMVKTMFDESSFGQAKMLPKIFGRELSLGDPKSQSMTISFSPKVEDDSGFTSDSFEPQAMVANHAYGNSSNRCVGDNSEAKLFPQFGNFNSHGRVSSVDLGNDDASSPQADERKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIRVLESEKGMNDNNKDQLPLPDIDFQARKDDGVVTVSFPLDMHPVSGVVKAFREHQIVPEESTVSTAQDKVIHTFSIRTQGGEAAAKMLKEKLEASLFKN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1897 503 CDD bHLH_AtAIB_like 348 411 - -
Lal1g1897 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 231 IPR025610 -
Lal1g1897 503 SMART finulus 357 406 IPR011598 GO:0046983
Lal1g1897 503 PANTHER MYC 5 501 IPR045084 GO:0003700|GO:0006355
Lal1g1897 503 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Lal1g1897 503 PANTHER TRANSCRIPTION FACTOR BHLH3 5 501 - -
Lal1g1897 503 MobiDBLite consensus disorder prediction 318 361 - -
Lal1g1897 503 Gene3D - 344 417 IPR036638 GO:0046983
Lal1g1897 503 Coils Coil 350 370 - -
Lal1g1897 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Lal1g1897 503 MobiDBLite consensus disorder prediction 330 361 - -
Lal1g1897 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 414 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1897 Lal-Chr1 21225198 21226709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1897 5 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.207 2.35e-156 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g1897 bHLH-MYC_N 4.5e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1897 - - gmx:100819968 666.381