Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1894 ATGGCTTCTTCAAATGGTAGTGGCTCACCTTGTGGAGCATGCAAGTTCCTAAGAAGAAAATGTGTAGTTGATTGCATTTTTGCTCCTTATTTTTGTTCAGAAGAAGGAGGTGCTAGATTTGCAACCATACATAAAGTGTTTGGTGCAAGCAATGTTTCTAAATTGCTTTTAAATATACCAATTCATGATCGGTGTGAAGCTGTTGTAACAATTGCTTATGAAGCTCAAGCTCGTATTAAAGATCCTGTTTATGGTTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAAATAATGCAAGTGAAATATAAAGTGGCTCAAAACATGGAGAATCATGAGTGGCCATGGAATATTTCAAGCCAACAAGAACAACCAATTAATCAATTTTGTCACATGAATCCAATATCCCCACAAAGCTCACTTGAATCAATTAATCATAGCAACAATATGATCAATATTGATGGGATTTTAATGCAAGATATACAAAGCATTGAAGGGTTTTCAATCCAAGCTTGTTCTAAGAAAATATCACATAACAATGACTTGGGTGAGTTACAAGAAATAGCACTTAGGATGATGAGGAAGTAA 606 0.3581 MASSNGSGSPCGACKFLRRKCVVDCIFAPYFCSEEGGARFATIHKVFGASNVSKLLLNIPIHDRCEAVVTIAYEAQARIKDPVYGCVSHIFALQQQVACLQAQIMQVKYKVAQNMENHEWPWNISSQQEQPINQFCHMNPISPQSSLESINHSNNMINIDGILMQDIQSIEGFSIQACSKKISHNNDLGELQEIALRMMRK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1894 201 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Lal1g1894 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 200 - -
Lal1g1894 201 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Lal1g1894 201 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1894 Lal-Chr1 21199715 21202005 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1894 2 200 AS2 family AT2G42430 51.230 1.68e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal1g1894 LOB 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1894 K13944 - gmx:100801508 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1894 1 21199715 21202005 Lal1g1894 1 21199715 21202005 ECH