Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1888 ATGGATTTTGATTATTCTCTCTTCCAATATCAAAATCTTCACTTTTTCCCTTCAAACCATTCCTCCAATTTAGTAGAGCAACCTTTCTCATTGGATGATGACTTACTTATTTTCTTCAACAATGACAATAACAACAGTATTCTTCCCTTCGATTCGAGTGACCTCTCACAATCACTACAAACCAAAGAACCATCCTTCTCGGAATCCAACTCTTTAGGCTCACAAGGTAGCCTCGAGTCACAAGAAGTCTCTTCCAATAGTATAATTTATCCTCAGAACAGTTCATTACACGAAACTCTCACCTGGTGGAATTCAGAAGAAATAAATATTAATAGTACTTTTATATCTGTTAACAGAGAAGTTGTTTCCGATGCATCTAATGCGGCATCACCACCAGCACCATTAGAAAGTAAGAAAGAGAAGAGGGTATTTAGAGGAGTGAGGAGAAGACCATGGGGTAAATATGCTGCTGAAATAAGAGATTCCACAAGGAAAGGAGTAAGAGTGTGGATAGGAACTTTTGACACAGCTGAAGAAGCAGCTTTAGCTTATGATCAAGCAGCTTTTTCTACAAGAGGTTCATTGGCAGTGCTAAATTTCCCAGTGGAAGTTGTAAAGGATTCCCTCAAAAACATGTCATGTAATTTTAAGCCAAATTCATGTTTAGAAAATGATTCTAATTTTTCTTCACCTGTTTTGGCACTCAAGAGAAAGCATAGCATGATAAGAAAATCAAATAAATCCAATAGTGATAAGAAGACCAAAAGGGTAGAAAGGAATCAATTATTGGAGATAAGTGATTCTAAAAATGTATTGGTTTTGGAGGACTTGGGTTCTGATTATTTGGACCAACTTTTGAGCTTGACTACTACTTCATCTCAAATTGAAACTAGTTTCTAG 900 0.3633 MDFDYSLFQYQNLHFFPSNHSSNLVEQPFSLDDDLLIFFNNDNNNSILPFDSSDLSQSLQTKEPSFSESNSLGSQGSLESQEVSSNSIIYPQNSSLHETLTWWNSEEININSTFISVNREVVSDASNAASPPAPLESKKEKRVFRGVRRRPWGKYAAEIRDSTRKGVRVWIGTFDTAEEAALAYDQAAFSTRGSLAVLNFPVEVVKDSLKNMSCNFKPNSCLENDSNFSSPVLALKRKHSMIRKSNKSNSDKKTKRVERNQLLEISDSKNVLVLEDLGSDYLDQLLSLTTTSSQIETSF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1888 299 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Lal1g1888 299 SUPERFAMILY DNA-binding domain 143 203 IPR016177 GO:0003677
Lal1g1888 299 CDD AP2 144 202 IPR001471 GO:0003700|GO:0006355
Lal1g1888 299 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Lal1g1888 299 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Lal1g1888 299 Pfam AP2 domain 143 193 IPR001471 GO:0003700|GO:0006355
Lal1g1888 299 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Lal1g1888 299 MobiDBLite consensus disorder prediction 59 79 - -
Lal1g1888 299 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Lal1g1888 299 PANTHER DNA-BINDING DOMAIN 126 290 IPR044808 GO:0003700|GO:0009873
Lal1g1888 299 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 126 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1888 Lal-Chr1 21159218 21160117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1888 104 287 AP2-EREBP Transcription Factor Family AT3G23240 47.283 3.78e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal1g1888 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1888 K14516 - gmx:100784784 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1888 1 21159218 21160117 Lal1g1888 1 21159218 21160117 ECH
Lal1g1888 1 21159218 21160117 Lal13g1018 13 7491916 7492353 PCT
Lal13g1018 13 7491916 7492353 Lal1g1888 1 21159218 21160117 PCT