Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1883 ATGACAGAATCAAACTATGGAAGAAATACTTCCAAAGTGGAGATGGAAAACCTTACCGTTCCGCCTGGTTTTGAATCCCTGACATCTTTCTTTCTGAAAAGGGTGGAAAAGGTTAAGAAAACTGATAAATCTGAAACCATTTCTGCATCTGAACAAAAGTCTGAGATGAATGGCATTACTGCATATAAGGATCGGCCATGGATACTCTTGGATGAAAGCAATCAGAAACCCAAGGAATCTCGCACTGAGCATCTTCCTACTGTTAAGGATCCCCCTATCGATGCTCGTCGTATGAAGGTGACTCGTAAATGTCCGAAATGCAGTAATTTTCGGAAGGTAACAGCAAGGTGGCATCCCGAGGATGCAAGAAACGAAGTCCTGGAAGAAGCTCCCACTTTCCACCCAACAGAAGAGGAGTTCAAAGACACACTCAAATATATTGCAAGCATACGTTCCACAGCAGAACCTTATGGAATTTGTCGTATCATTCCTCCTCTTCTCTGGAAACCACCGTGTACTCTTGAGGAAAAGAGCATATGGGAGTTCTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGATACCAAGTTCAGCGTGCACAAGAAACTATGGCTAGCTCTTCTGAAAATACAAAGACCAAGAGAAGAAAAGGCACACCAGTTGCTTTGGACTCTCAACTAGAGAATGAAATCAATTGCACCACAAATTACCAGAATCTTGAAGTCTGTGTGTGTGAGTCTGTAACTGGTCCTAAATTTAGTCTGAAAACATTCAAGAAATATGCAGATGAGTTCAAGACCCAGTACTTCAATCACACAGACAAGAATATGGTCACCGATTCTGATATAGCTATACCTCAAAACCAGTGGGAACCGTCTGTGGAGAATATTGAGGGTGAATATGGACGAATTGTCCAAAATCCAACTGAAGAAATTGAGGTGCTTTGTGGCAACACTTTAGATGCTGTAGTTCTTAGCAGTGGGTTTCCAACCGTTTCTGATGATTCAGAGGCTTGCACTTTCCCCGAATATGTGAAATCTGGATGGAACTTGAATAATATGCTTAAACTGCCAGGGTCTCTTCTTTCTTTTGAAAGCTCCGAAGCTTCACGCAATTTTGTCCCTCGGATTAATGTAGGAATGTGCTTTTCTCCACTCTACTGGAGAGTTGAAGAGCACCAGTTATACTCGTTATCTTATATGCATTTGGGCGAACCTAAAGTGTGGTATTGCATCCCTGGAAGATTCGCTCTCAACTTTGAAGCAATTAGGAAGAAGTATCTCCCAGATATGTGTGCAGAACAACCTGGTGAGAATCACAGTCTGGTGATGCAATTATCCTGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGTGTTCAGTATCCTCGTGAGTATGTTCTTATCTTCCCGGGAGCATATCATTCTGGATTTGACTGTGGTTTCAACTGTTCTGAAGCTGTAAGTTTTGCTCCTCTTGAGTGGTTGCTTCGTGGACAGAATGTTGTGGATTTATATTGTGAACAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTGCTAGGAGCAGCAAGAGAAGCTGCGAGGGCACGATGGGAAGTTGATCTGCGTATGATGAGGACACCGCAAAACATAGCAAGTAAAGATGCTTACCGAAGAGATGGTATCTTAGCAAAAGCTTTGGATTTTCGCATCAGGAGTGAAAGTTTGAAGAGGGAATTTCTGTGCATTTCTTTGAAATCACAAAAAATGGATGGAACTTTAGATGCTACCGATAAAAGAGAATGCAGTATATGTCTTCGTGATCTATACTTTTCTGCGGTAGTGTGTTCATGTTCAGAAGACAAGTTTGTGTGTGTTGATCACACAAAACAGCTTTGTTCTTGCAACTGGAGCAAGAAAACTCTCCTATACCGTTATGAAATCAGTGAGTTGAATCGTCTTCATCAAGCTTTGGATGGTAAATTAAGTTCAGTCTATAAATGGGCGAAAGGGGATCTTGGATTATCTATGATCTCTGTTGCCCCCAAGGATCGAAAACACCTTGAACAAAATGTAAGCAGTTCAAGACCGGCTTCACAAGACTTGAAGATGAAGGAATCTAGATCGAAGACGACTTCAGAAGCAGACTCAAAACTGAAAGAACGTCTTTTGCAGGCGATAACAAATGCATCAAAAAGGAAAAAAACTGAGGTTGAATCAAAAGTTATGGGCACCTCTACTGACCCTTTTAGCAGTTCTACAAAAATGAAAGTGAAAGAGAAAATCTTGGGGTGCCAATCTGCTAAAACATGCATTGGTGGAGGAGTCAATTCTGCTGACACCAAAACTGACATGAAGACACTTGGTGGTAGTAAGTTTTCAATTTCGAAGAAAGTAGAACCAAAAGTAACTTATCCAGTTTCTTCAGTGGCAAATTCACATTTCTTGACTCTAGTACAAGAAGGCAAGTTAGTTGAAATTTCATCTGATAGTAGTAGCACATCTTCCTCTTCAGAATCTGATGACTAG 2520 0.4099 MTESNYGRNTSKVEMENLTVPPGFESLTSFFLKRVEKVKKTDKSETISASEQKSEMNGITAYKDRPWILLDESNQKPKESRTEHLPTVKDPPIDARRMKVTRKCPKCSNFRKVTARWHPEDARNEVLEEAPTFHPTEEEFKDTLKYIASIRSTAEPYGICRIIPPLLWKPPCTLEEKSIWEFSEFVAQIQRIDGYQVQRAQETMASSSENTKTKRRKGTPVALDSQLENEINCTTNYQNLEVCVCESVTGPKFSLKTFKKYADEFKTQYFNHTDKNMVTDSDIAIPQNQWEPSVENIEGEYGRIVQNPTEEIEVLCGNTLDAVVLSSGFPTVSDDSEACTFPEYVKSGWNLNNMLKLPGSLLSFESSEASRNFVPRINVGMCFSPLYWRVEEHQLYSLSYMHLGEPKVWYCIPGRFALNFEAIRKKYLPDMCAEQPGENHSLVMQLSCSILKAEGIPVYRCVQYPREYVLIFPGAYHSGFDCGFNCSEAVSFAPLEWLLRGQNVVDLYCEQRRKTLLSYDKLLLGAAREAARARWEVDLRMMRTPQNIASKDAYRRDGILAKALDFRIRSESLKREFLCISLKSQKMDGTLDATDKRECSICLRDLYFSAVVCSCSEDKFVCVDHTKQLCSCNWSKKTLLYRYEISELNRLHQALDGKLSSVYKWAKGDLGLSMISVAPKDRKHLEQNVSSSRPASQDLKMKESRSKTTSEADSKLKERLLQAITNASKRKKTEVESKVMGTSTDPFSSSTKMKVKEKILGCQSAKTCIGGGVNSADTKTDMKTLGGSKFSISKKVEPKVTYPVSSVANSHFLTLVQEGKLVEISSDSSSTSSSSESDD 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1883 839 ProSiteProfiles JmjN domain profile. 130 171 IPR003349 -
Lal1g1883 839 Pfam C5HC2 zinc finger 599 650 IPR004198 -
Lal1g1883 839 MobiDBLite consensus disorder prediction 698 715 - -
Lal1g1883 839 PANTHER LYSINE-SPECIFIC DEMETHYLASE 85 751 - -
Lal1g1883 839 SUPERFAMILY Clavaminate synthase-like 237 536 - -
Lal1g1883 839 MobiDBLite consensus disorder prediction 727 750 - -
Lal1g1883 839 Gene3D Cupin 115 493 - -
Lal1g1883 839 SMART cupin_9 346 509 IPR003347 -
Lal1g1883 839 MobiDBLite consensus disorder prediction 683 715 - -
Lal1g1883 839 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 85 751 - -
Lal1g1883 839 Pfam JmjC domain, hydroxylase 377 492 IPR003347 -
Lal1g1883 839 SMART JmjN_1 129 170 IPR003349 -
Lal1g1883 839 Pfam jmjN domain 131 164 IPR003349 -
Lal1g1883 839 ProSiteProfiles JmjC domain profile. 346 509 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1883 Lal-Chr1 21121750 21128321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1883 19 795 JUMONJI Transcription Factor Family AT1G08620 41.800 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal1g1883 JmjC 5.9e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1883 - - gmx:100804864 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1883 1 21121750 21128321 Lal1g1883 1 21121750 21128321 ECH