Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1881 ATGATGGATCATGTTGTTGGTGGCAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGTTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACACACTGGAGAGGAGGTAGCTATCAAGCTGGAACCTGTGAAGACCAAGCATCCACAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGATTCCCCATCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATTGCATGGCTATTGACCTTCTTGGACCAAGCCTGGAAGATTTGTTCAATTATTGCAACCGAAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAGTATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTTGGACGTAAAGCTAACCAGGTGTACGTCATTGACTATGGTCTCGCGAAAAAATATCGGGATCTTCAGACCCATAAGCACATACTATACAGGGAGAACAAAAACCTTACAGGAACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTCGAATCTCTTGGTTATGTGCTTATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGTACCAAAAAACAAAAATACGACAGAATCAGTGAGAAGAAGATGTCTACTCCCGTCGAGGTTCTCTGCAAGTCATATCCCTCAGAGTTTGTATCATATTTCCATTACTGTCGATCATTGCGGTTTGAAGACAAGCCAGATTATTCATATTTAAAGAGGCTTTTTAGAGATTTATTCATCAGAGAAGGCTATCAGTTTGACTATGTTTTTGACTGGACTGTATTGAAGTATCCACAGATTGGTAGCAGCAGCTCTAGAGGGCGGCATGGCAGTGGCAAAGCAGCTATGAATCCTGGACCATCTGTACAAAAGCCGGAAAAGATCTCAGTTGGAAAAGAGATTCGAGAGAAATTCTCTGGCGCTGTTGAAGCATTCCCCCGAAGGAACCCGACAAGTTCTAGTCCTCGAGATGATCACACCAAACATAGGTCTTTTGATGAAGTAGCAGCACACAAGGATGTGCATGATGTTCAAGAGAAGGGATACAGTTCGTCTCGATACGGCAGCAGTTCCAGAAGAGCAATAGCATCATCAGCCAGGCCAAGTTCCTCAGGTGACCATACTGACAGTCGTACCGGCCGGGTGACCTCAAATGCCAGCCGTCCATCTGCAGCGCCTAGAACTCAACCTGTGTATGAGACTAAACAAGCAAGTTTCACTCGCTCCGGTTCTAAAAGAGGCAATCGCGATGATCCTCTTAGGAGCTTTGAGCTCCTCTCTATCAGGAAGTAA 1389 0.4392 MMDHVVGGKFKLGRKIGSGSFGELYIAVNVHTGEEVAIKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNCMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHILYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMSTPVEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGSSSSRGRHGSGKAAMNPGPSVQKPEKISVGKEIREKFSGAVEAFPRRNPTSSSPRDDHTKHRSFDEVAAHKDVHDVQEKGYSSSRYGSSSRRAIASSARPSSSGDHTDSRTGRVTSNASRPSAAPRTQPVYETKQASFTRSGSKRGNRDDPLRSFELLSIRK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1881 462 PANTHER CASEIN KINASE-RELATED 2 450 - -
Lal1g1881 462 MobiDBLite consensus disorder prediction 327 341 - -
Lal1g1881 462 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Lal1g1881 462 CDD STKc_CK1_delta_epsilon 9 283 - -
Lal1g1881 462 MobiDBLite consensus disorder prediction 443 462 - -
Lal1g1881 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lal1g1881 462 MobiDBLite consensus disorder prediction 351 379 - -
Lal1g1881 462 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Lal1g1881 462 MobiDBLite consensus disorder prediction 301 462 - -
Lal1g1881 462 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 450 - -
Lal1g1881 462 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lal1g1881 462 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1881 462 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1881 462 MobiDBLite consensus disorder prediction 381 442 - -
Lal1g1881 462 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1881 Lal-Chr1 21104336 21112106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1881 3 214 Miscellaneous Gene Families AT1G29230 27.854 1.92e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal1g1881 Pkinase 7.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1881 K08960 - gmx:100807882 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1881 1 21104336 21112106 Lal1g1881 1 21104336 21112106 ECH
Lal1g1881 1 21104336 21112106 Lal12g0849 12 6956300 6962890 PCT
Lal1g1881 1 21104336 21112106 Lal13g1043 13 7717108 7724207 PCT
Lal12g0849 12 6956300 6962890 Lal1g1881 1 21104336 21112106 PCT
Lal13g1043 13 7717108 7724207 Lal1g1881 1 21104336 21112106 PCT