Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1877 ATGAGTCACTCATTGAATCCATGGATGTTCAATTTTCAGAAGCTCGCTCTAGAACTCAAATGTCCTCTCTGTTTGAGCTTATTCAAGGATCCGATGTTACTTCCATGCAATCATTTGTTTTGCAAGTATTGCTTAGGTGATTTTACAATGGGTGTGATGAAGTGTGAATGTGCTGTGTGCAAGACTAAGTATGCTGAAAGAGATGTGAGGAGCATGCCTTTTGTGGAAAACATGGTATCCATCTATAGAAGCTTGGAGTCTACCTTCTCTCCCAGCCTTATTCCGCAGTGTTCTTCTGATGATGCGAGGGTTTTGGCACCATGTCAAGCATCTCTCAATTCAAGCTATGGTAATAAAATGACGGATAAGGTTATGTTGAGTTTACCTCATTCTAATGAGGTTGGGGCTGGAAAGAATCACAAGTTGAAGGGGAGTGACAGTGTAGTGCATGATAAAACCGAGGAGCTTGAGTTGTCTCCTGGGGGAAGGGTTGACTCTCACAGTACAGGAAAGCCTAGTCCAATGCAGCATTCCCAAATGGGAGTTGGTGGGCATGCATACTGCAAACTTATGGAAATGGATGTGAATCAAGTGATGCAATCGGCAACAGGCAGCCCTCTATTTTGTGACACCAAAGGTTCAGACTGCAGTGATCTAGACAGTGAGCATCCATTGGTTGCTGGAAGATCAGAGAAATCTTCATTGAAGAGAGCAATCGCACAACGCGAAACTTTGATAGGAAGAAGGAAACAGTTCAGGTCTGGAAGTTCAGCCTCTGAAACTGATGGTCTGATGATAGAGCTCATAAGACAAAAAAATCATTTGGCTGCAGATGGCTATGTTCAGTCTAGCTCCACAGATCATAATAATTTAGTGGGTTCCTGCTCTAACCTGGACCCTAAATCTGGAAAGGGCCCTGGTGCAATGTTTGCTGCAAATCCAGATGATTCACACACAAGTACAAGCATCTGTTCATTTTGCCAGTCCTCTAAAATCTCAGAGGCTACTGGGGAAATGTTGCATTCTGCAAATGGGTATATGGTTACAGGAGATAAAGCACTGCAACCGAACGTCATACACGTGCATAAAATTTGTGCTAACTGGGCACCACAAGCGTATTTTGTTGATGACATTGTCAAGAATTTGAAATCTGAAGTGGCTAGGGGATCAAAATTAAAATGCAGCAAATGCGGTCTAAAAGGAGCTGCTCTTGGCTGCCTTGTCAAGTCCTGTAGAAAAACATATCACGCTCCTTGTGCAATGGAGATACTGACTTGCCGTTTCGATTATGAGAATTTTCTAATGCTCTGTCCTGCTCATGCTCGTGGGAAATTTCCAAATGAGAAATCCTGGTCTAAGAAACAACCAACTCAGAACCTTCCAGCTTTATCTCATCTGCCATCTCATGAACCAAACCCTCTTCCAGCTTTACAGGATGATAGTAAGAAATTGGTTTTTTGTGGATCTGCTCTACCAGCTGACGAAAAGGCACTTTTTGTCAATTTTGCAAGTAAGTTTGGTGCTGCGGTCACCAAGTATTGGACCCCCAATGTCACCCATGTCATTGCTGCAACTGATGAAAATGGAGCATGCTCCAGGACGCGGAAAGTTCTCATGGCAATTCTAAATGGACAATGGATTCTCAAAATGGATTGGGTAAAAGCTTGCATGGAAGGGGTGAATATGGTAGAAGAGGAACCATACGAGATTAGCCTTGACAACCAAGGGTGTCATGGTGGCCCAAAATCTGGCAGACTTAGGGCACTGGCCAATGAGCCAAAGCTATTCAGTGACTTCAAGTTTTATTTTTCTGGGGATTATGTTACTACGTATAAGGAAGATCTTGAAGATTTGGTTGAGGTAGGAGGAGGTACTGTCTTGAGAAGCAAGGAAGAATTAGAAGCAAAAAGACATGAATTTGTAGCAGCTCCTTGGAAGTTGCTCATTGTCTACAATATTGACCCTCCACAAGGATGTAAATTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGACTGAACGATGCGCAAGATTTAGCAGCTAATACTGGTTACCAAATCATTGGTCATACATGGATTCTGGAGTCCATTGCTGCATGTAATCTGCAACCTTTTGTTAGCTAA 2121 0.4295 MSHSLNPWMFNFQKLALELKCPLCLSLFKDPMLLPCNHLFCKYCLGDFTMGVMKCECAVCKTKYAERDVRSMPFVENMVSIYRSLESTFSPSLIPQCSSDDARVLAPCQASLNSSYGNKMTDKVMLSLPHSNEVGAGKNHKLKGSDSVVHDKTEELELSPGGRVDSHSTGKPSPMQHSQMGVGGHAYCKLMEMDVNQVMQSATGSPLFCDTKGSDCSDLDSEHPLVAGRSEKSSLKRAIAQRETLIGRRKQFRSGSSASETDGLMIELIRQKNHLAADGYVQSSSTDHNNLVGSCSNLDPKSGKGPGAMFAANPDDSHTSTSICSFCQSSKISEATGEMLHSANGYMVTGDKALQPNVIHVHKICANWAPQAYFVDDIVKNLKSEVARGSKLKCSKCGLKGAALGCLVKSCRKTYHAPCAMEILTCRFDYENFLMLCPAHARGKFPNEKSWSKKQPTQNLPALSHLPSHEPNPLPALQDDSKKLVFCGSALPADEKALFVNFASKFGAAVTKYWTPNVTHVIAATDENGACSRTRKVLMAILNGQWILKMDWVKACMEGVNMVEEEPYEISLDNQGCHGGPKSGRLRALANEPKLFSDFKFYFSGDYVTTYKEDLEDLVEVGGGTVLRSKEELEAKRHEFVAAPWKLLIVYNIDPPQGCKLGEEVSILWQRLNDAQDLAANTGYQIIGHTWILESIAACNLQPFVS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1877 706 ProSiteProfiles Zinc finger RING-type profile. 21 61 IPR001841 -
Lal1g1877 706 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Lal1g1877 706 ProSiteProfiles BRCT domain profile. 484 570 IPR001357 -
Lal1g1877 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 443 IPR013083 -
Lal1g1877 706 Pfam BRCT domain, a BRCA1 C-terminus domain 593 703 IPR001357 -
Lal1g1877 706 ProSiteProfiles BRCT domain profile. 591 706 IPR001357 -
Lal1g1877 706 MobiDBLite consensus disorder prediction 450 465 - -
Lal1g1877 706 Gene3D BRCT domain 480 586 IPR036420 -
Lal1g1877 706 Pfam BRCA1 C Terminus (BRCT) domain 484 557 IPR001357 -
Lal1g1877 706 SUPERFAMILY RING/U-box 13 84 - -
Lal1g1877 706 CDD ePHD 324 440 - -
Lal1g1877 706 SMART BRCT_7 474 560 IPR001357 -
Lal1g1877 706 SMART BRCT_7 593 699 IPR001357 -
Lal1g1877 706 MobiDBLite consensus disorder prediction 155 180 - -
Lal1g1877 706 Gene3D BRCT domain 593 699 IPR036420 -
Lal1g1877 706 SUPERFAMILY BRCT domain 595 703 IPR036420 -
Lal1g1877 706 Pfam Zinc finger, C3HC4 type (RING finger) 18 64 - -
Lal1g1877 706 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 4 704 IPR031099 GO:0006281|GO:0006974
Lal1g1877 706 MobiDBLite consensus disorder prediction 446 465 - -
Lal1g1877 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 92 IPR013083 -
Lal1g1877 706 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 4 704 - -
Lal1g1877 706 Pfam PHD-like zinc-binding domain 362 440 - -
Lal1g1877 706 ProSiteProfiles Extended PHD (ePHD) domain profile. 321 441 IPR034732 -
Lal1g1877 706 SMART ring_2 21 60 IPR001841 -
Lal1g1877 706 SMART PHD_3 393 441 IPR001965 -
Lal1g1877 706 SUPERFAMILY BRCT domain 484 571 IPR036420 -
Lal1g1877 706 CDD BRCT_Bard1_rpt1 484 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1877 Lal-Chr1 21060942 21067201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1877 514 627 Core DNA Replication Machinery Family AT4G02110 31.667 1.61e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1877 K10683 - gmx:100784883 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1877 1 21060942 21067201 Lal1g1877 1 21060942 21067201 ECH
Lal11g1073 11 14364892 14369837 Lal1g1877 1 21060942 21067201 LSH