Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1876 ATGAAATCTTCTCATCAAAGGGTTCATGCTCTTATCTTTCATATAATCTTCATATCTTTGCTACCACTGAAAATTACAGAAGCCTCAACAAGAAGAGAAGCAGAAGCAGAAGCAGAAGCTCTTGTGAAATGGAAAAACAGTCTATCCCAACCTCTTCCTTATTCTCTAACATCATGGTCCTTCAACAACATTGTCAACCTTTGCAATTGGGGTGGCATTGTTTGTGACTATGCCAATACAACTGTCTCAGAGATAAACTTAAGAGATTCCAAACTCAATGGGACAATATCTGGCTTGTATTTTGGTTCCCTACTAAACCTCACTAGCCTCAACCTCAATGGAAATAATCTTGGAGGGTCAATATCTTCCACAATTCATTTCACAAGGGGAAATTCTTCCACCTTAGGCCAACTTACAGAGTTAAGGCATCTTGATCTCAATCATAATAAGTTGAATTCTACAATTCCATTTCAACTTGGCTTCTGTACAAATTTGACCTACCTCAGTTTAGCAAATAATGATCTCACTGGTCACTTGCCTTTATCACTATCTGGTCTGACAAAGATATCGGATCTCGAATTATCAGATAATTTCTTTTCTGGTGAAATTTCTGCTTCATTAATCTCTAACTGGACTGAGTTGATCAATTTGCGAGTCCGAAACAATACTTTAACAGGAGAGATTCCTCGAGAGATTGGAAACCTGAAAAAAATTATAAATTTAGATCTTGCAGATAACCATTTCTCTGCTCCAATTCCTCCAACCATTGGGAACCTTAGAAACATTACAGAATTACATATTTTCAACAATAAGCTCTCAGGAACCATTCCCACAGATATTGGAAACTTAACCTCACTTCAAGTTTTTGATGTGAGCACTAATAATTTGGATGGAGAGTTACCAGAGTCCATCACTCAACTAACTGGTTTAAGAAAATTTTCCGTGTTCGCCAATAACTTCTCAGGCAGCATTCCCAGAGATTTTGAAAAGCACAGTCCTTATTTGGATGGTGCCTCCTTTTCAAACAACAGCTTCACGGGAGAGTTGCCTTCTGACTTGTGCAGTGGTGTCAGACTACAAAATTTGACTGCCAATCATAACAACTTTTCCGGGCCATTGCCGAAGTCCATAAGAAATTGTTCAACACTAGTTAGAGTTAGGCTTGAAGAAAACCAATTCAGTGGAAACATCACAGAAGCATTTGGGGTTCATCTGAGTCTTGCTTATATCTCACTTAATGGAAATCAATTTGTCGGTGAGCTCTCGTCTAAGAACCATTTTACCGGAAAAATTCCAAAGAGTATTGGCAGACTGACTCGGCTAGAAATTCTTGATTTATCAGATAACAACTTAAGTGGAAGCATACCCGAAGAGATCAACAATTGTCAGCAATTAATAAGCTTGAACTTGAGTCATAACAAGTTCTCTGGGGACATACCTTATCAACTTGGCAATCTCATCTCACTCCAACAACTGTTGGACCTCAGTAGCAACTCTTTTTCTGGAGCGTTTCCTCGAAATCTTGATAAGCTTAAATCATTGGAGTTTTTCAATATATCACACAACCATCTATCAGGAACAATTCCAAAATCTGTCTCAAGTATGATTCAGCAAACCAATGAACCTGACGAAGAGTCCAAAAGTATTAAGGATAGTAATCAACTTCATCACACAGTAAGGGGAAGAGATACAAGGTTCACATTTTCTGAAATTTTTAAGGCCACCAATGACTTCAATGACATGTACTGCATTGGAAAAGGAGGATTTGGGAGTGTTTACAGAGCAAAGTTATCTACAGGTGAAGTTAATGCTGTCAAAAGGCTGAATATCACAAACTCAGATGAGATTCCAGAAATGAATCTCCAAAGTTTTGAGAATGAGATAAGAACACTTACTGAAGTGAGGCACCGCAATATAATCAAGTTTTATGGTTATTTTTCCTGGAAGAGACAAATGTTCTTGATTTATGAATTTGTTGAGAGAGGTAGTTTGACAAAAGTTCTGTATGAAGAAGGAATCTTGGAGTTGAGCTGGTCTATAAGGGTGAAAATTGTGCATGGAATAGCGAATGCAATTGCCTACCTACACAATGATTGTTCCCCACCAATTGTGCACAGAGATGTTACCTTGAATAACATATTACTTGACTCAGAATTTGAACCCCATCTTGCAGATTTTGGCATAGCAAAGCAACTAAGCTCTAGCACTTCAAACTGGACCTTGGTGGCAGGTTCCTATGGCTACATGGCTCCAGAGCTAGCACAAACAATGAAGGTCACCGATAAGTGTGACGTCTATAGCTTTGGAGTGGTGGTATTGGAGGTAATTATGGGAAAGCACCCAGGAGAACTCTTAACTACCATGTCTTCAATTAGGTCTTTGTCATCAGTGGTGGATCCGCTCGCACAAGTGCTTCTGAAAGATGTGTTGGACCAACGGCTTCCACCACCAAGTGGTCGATTAGCTAAAGTAGTAATCGTATTAGTGAGCATAGCTTTGGCATGCACGCGTACGACTCCAGAGTCCAGACCTACAATGTATTCTGTTGCACAAGATATATCAGCTACCATTACTAAAAAAGCTTGTCTTACTGAGCCATTTGGTATGATCACCCTGAGCCAACTTATGGAGTTTCATAAATAG 2643 0.3912 MKSSHQRVHALIFHIIFISLLPLKITEASTRREAEAEAEALVKWKNSLSQPLPYSLTSWSFNNIVNLCNWGGIVCDYANTTVSEINLRDSKLNGTISGLYFGSLLNLTSLNLNGNNLGGSISSTIHFTRGNSSTLGQLTELRHLDLNHNKLNSTIPFQLGFCTNLTYLSLANNDLTGHLPLSLSGLTKISDLELSDNFFSGEISASLISNWTELINLRVRNNTLTGEIPREIGNLKKIINLDLADNHFSAPIPPTIGNLRNITELHIFNNKLSGTIPTDIGNLTSLQVFDVSTNNLDGELPESITQLTGLRKFSVFANNFSGSIPRDFEKHSPYLDGASFSNNSFTGELPSDLCSGVRLQNLTANHNNFSGPLPKSIRNCSTLVRVRLEENQFSGNITEAFGVHLSLAYISLNGNQFVGELSSKNHFTGKIPKSIGRLTRLEILDLSDNNLSGSIPEEINNCQQLISLNLSHNKFSGDIPYQLGNLISLQQLLDLSSNSFSGAFPRNLDKLKSLEFFNISHNHLSGTIPKSVSSMIQQTNEPDEESKSIKDSNQLHHTVRGRDTRFTFSEIFKATNDFNDMYCIGKGGFGSVYRAKLSTGEVNAVKRLNITNSDEIPEMNLQSFENEIRTLTEVRHRNIIKFYGYFSWKRQMFLIYEFVERGSLTKVLYEEGILELSWSIRVKIVHGIANAIAYLHNDCSPPIVHRDVTLNNILLDSEFEPHLADFGIAKQLSSSTSNWTLVAGSYGYMAPELAQTMKVTDKCDVYSFGVVVLEVIMGKHPGELLTTMSSIRSLSSVVDPLAQVLLKDVLDQRLPPPSGRLAKVVIVLVSIALACTRTTPESRPTMYSVAQDISATITKKACLTEPFGMITLSQLMEFHK 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1876 880 Pfam Leucine Rich Repeat 440 462 IPR001611 GO:0005515
Lal1g1876 880 Pfam Leucine Rich Repeat 106 126 IPR001611 GO:0005515
Lal1g1876 880 ProSiteProfiles Protein kinase domain profile. 578 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1876 880 Gene3D Transferase(Phosphotransferase) domain 1 659 865 - -
Lal1g1876 880 SUPERFAMILY L domain-like 54 419 - -
Lal1g1876 880 PANTHER UNNAMED PRODUCT 541 855 - -
Lal1g1876 880 PANTHER UNNAMED PRODUCT 425 537 - -
Lal1g1876 880 PANTHER UNNAMED PRODUCT 12 327 - -
Lal1g1876 880 PANTHER UNNAMED PRODUCT 131 424 - -
Lal1g1876 880 SMART LRR_sd22_2 162 194 - -
Lal1g1876 880 SMART LRR_sd22_2 138 159 - -
Lal1g1876 880 SMART LRR_sd22_2 438 461 - -
Lal1g1876 880 SUPERFAMILY L domain-like 423 535 - -
Lal1g1876 880 ProSitePatterns Tyrosine protein kinases specific active-site signature. 703 715 IPR008266 GO:0004672|GO:0006468
Lal1g1876 880 Pfam Protein kinase domain 581 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1876 880 Gene3D Ribonuclease Inhibitor 331 423 IPR032675 -
Lal1g1876 880 Gene3D Ribonuclease Inhibitor 424 540 IPR032675 -
Lal1g1876 880 Gene3D Ribonuclease Inhibitor 34 207 IPR032675 -
Lal1g1876 880 Gene3D Ribonuclease Inhibitor 208 330 IPR032675 -
Lal1g1876 880 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Lal1g1876 880 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 541 855 - -
Lal1g1876 880 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 425 537 - -
Lal1g1876 880 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 12 327 - -
Lal1g1876 880 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 131 424 - -
Lal1g1876 880 CDD STKc_IRAK 584 853 - -
Lal1g1876 880 SUPERFAMILY Protein kinase-like (PK-like) 557 852 IPR011009 -
Lal1g1876 880 Gene3D Phosphorylase Kinase; domain 1 541 658 - -
Lal1g1876 880 SMART LRR_typ_2 283 307 IPR003591 -
Lal1g1876 880 SMART LRR_typ_2 104 129 IPR003591 -
Lal1g1876 880 SMART LRR_typ_2 511 535 IPR003591 -
Lal1g1876 880 SMART LRR_typ_2 438 462 IPR003591 -
Lal1g1876 880 SMART LRR_typ_2 138 162 IPR003591 -
Lal1g1876 880 PRINTS Leucine-rich repeat signature 141 154 - -
Lal1g1876 880 PRINTS Leucine-rich repeat signature 438 451 - -
Lal1g1876 880 ProSiteProfiles Leucine-rich repeat profile. 440 462 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1876 Lal-Chr1 21055183 21059399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1876 37 857 Receptor kinase-like Gene Family AT4G28490 31.917 1.63e-133 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lal1g1876 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1876 - - egr:104455531 732.635