Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1868 ATGCGTTACAGAATGATTTTTTTCATTGATTTATGTGCTGTTACTGCAAGTACTGTAGTTGGGTCCCATATTTGGGTGGAAGATCCTGATATAGCTTGGATTGATGGTGAGGTCTTGGAGGTTAATAATGAAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACAGTTGTTGTAAAAGCTTCCCGCGTTTATCATAAAGATACCGAAGCGCCACCAAGTGGAGTGGATGATATGATAAAGCTTGCATATCTGCATGAACCTGGAGTCCTAGATAACCTGAGATCAAGATATGATATCAATGAAATTTATACATACACTGGGAATATACTAATTGCTGTCAACCCTTTTATAAAACTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAACATTTGGTGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCTGCATATAGGCTTATGATAAATGACGGAATCAGCCAGTCGATATTGGTTAGTGGTGAAAGTGGTGCTGGTAAAACAGAAAGTACTAAGTTACTTATGAGGTATCTTGCTTACATGGGAGGGAGATCTGCAACTGCTTCTGAAGGTAGAACTGTTGAGCAAAAAGTTCTGGAGTCTAATCCTGTTCTCGAAGCCTTTGGCAATGCAAAAACTGTCAGGAACAATAACTCAAGTCGTTTTGGTAAGTTCGTGGAGATCCAGTTTGACAAGAGGGGAAGAATTTCAGGAGCAGCTATCAGAACTTATCTGCTAGAAAGATCACGTGTTTGCCAGGTCTCAGATCCAGAGAGGAATTATCACTGTTTCTACATGCTCTGTGCTGCACCTTCAGAGGATATCAAGAAGTACAAATTAGGAAACCCAAGAACATTTCATTATCTGAATCAATCAAATTGCTATGAGTTGGAAGGCCTTGATGAATCTAAAGAATATAGTGCAACAAGGAGTGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCGAGTTGTTGCGGCAATTTTGCATCTTGGCAACATCGAATTTGTGAAAGGGGAGGAGATGGACTCATCTATGCCCAAAGATGAAAAATCTCTGTTCCATCTACAGACTGCTGCTGAGCTTTTCATGTGCGACGCGAAGGCACTTGAAGACTCTCTTTGCAAACGTGTAATTGTTACTCGCGATGAAACAATTACAAAATGGCTGGATCCTGAAACTGCTGCAGTCAGCCGAGATGCTTTGGCAAAGATTGTTTACACTAGGTTGTTTGACTGGTTGGTTGATAAGATCAATAATTCCATCGGTCAAGACCCTGAGTCAAAATCCTTAATAGGAGTGCTGGATATTTACGGTTTTGAGAGTTTCAAGAATAACAGTTTTGAGCAATTTTGTATAAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTTAAAATGGAGCAAGAAGAATACAAAACTGAGGAAATCGATTGGAGTTACATTGAATTTGTTGACAATCAAGATATTCTTGATCTCATTGAAAAGAAACCCGGTGGCATTATTGCTCTACTGGACGAAGCTTGTATGTTTCCTCGATCAACACATGAAACTTTTGCCCAAAAGTTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCGAAATTATCACGCACCGACTTCACAATTTGTCATTATGCTGGTGATGTCACTTATCAAGCTGATTATTTCCTCGACAAGAACAAAGATTACGTTGTCGCAGAACACCAAGAACTTCTTTATGCTTCCAAATGCCCCTTTGTATCGAGTTTGTTTCTCCCTTCACCTCAGGATTCATCCAAAAAATCAAAGTTCTCTTCAATAGGTTCCCAATTCAAGCAACAATTGCAAGCTTTACTGGAAACTCTTAGTGGCACTGAGCCGCACTACATTCGTTGTGTAAAACCCAATAATCTTCTTAAGCCAGCAATTTTCGAGAATAAAAATGTCCTGCAGCAACTACGTTGTGGGGGAGTTATGGAGGCAATTAGAATAAGCTGTGCTGGGTATCCCACTAGAAAAACCTTTGACGATTTTGCAGATCGTTTTGGCCTTCTTGCACCTGAAGTGTTGGATGGAAGTATTGATGAGGTTGCTGCGTGCAAGAGGATCCTAGAAAGTGTTGGACTTAAAGGCTATCAGATTGGTAAAACAAAGGTGTTTCTTCGAGCTGGTCAACTGGCAGAATTAGATACTAGTAGGAGTGTGATCTTAGGAAAGTCAGCAATCATTATTCAGAGGAAAGTTCGTTCCTATTTTACTCGCCGAAGTTTCATCTCAGCTCGTTTGTCTGCTATTCAGATTCAAGCTGTATGCAGAGGACAACTTGCTAGGCAAGTTTACGAGGTAAAGCGGAAGGAGGCTGCTATTTTGGCGATTCAGTCGTATCACCGCATGCATATTGCTAGGACGGTATACAAAGAGTTGTATACCTCTGCTGTCTCTATTCAGACTGGCATGCGGGGGATGGCTGCTCGTTGTGAGCTATGCTTTAGAAGGCAGACTACAGCGTCAATTGTCATCCAGAGCCACTGCCGAAAATACCTGACACAACTTCATTTTAAGAGATTAAAGAAGGCAGCAATTATCACACAATGTGCATGGAGAGGAAAAGTTGCACGGCATGAACTGCGGCAGCTCAAGATGGCTGCAAGAGAGACAGGTGCTCTCCAAGCTGCAAAAACTCAGCTTGAAAAGCAAGTTGAAGACCTTACATTGAGATTGCAGCTGGAAAAACGTTTGAGGGTTGACATTGAAGAAGCAAAAACACAAGAGAACAAAAGATTACAATCTGCTTTGCTAGAGACACAACTTCAGTTTAAGGAAACTAGGATACTTCTTGAGAAGGAGCGGGAGGCTACGAAAAAAGCCGAAGAGAGAGTGCCTATCATAAAGGAGATTCCAGTTGTTGATCATGCTTTGTTGGAGAAACTCAGCAGTGAAAATGAAAAACTCAAGAGCATGGTGAGTTCACTGGAAAAGAAAATCGATGAAACCGAAAAAAGGTACGAAGAGGCAAGCAGAATTGGAGAAGAAAGGTTGAAGCAAGCTTTGGAAGCCGAGTCAAAACTAACCCAGTTGAAAGATGCTATGCAAAGGCTTGAAGAGAAATTCTTAGACATTGAATCTGCAAACCATATTCTTCAGAAACAATCTCAGCTAAACTCGTCCGTGAAAACATTAGCAGAGCACATCTCGACCCCTGTAGCCGAGGAAACATGTGTTACACCTGGGAAACAGTTGGGTACAGAATCTGATGCTAAATTGAGGAGATCTTTCATTGAACGACAACTTGAGAATGTTGATTCACTTGTCAAATGTGTAATGAAAAATATTGGCTTCGATAATGGAAAGCCGGTTGCTGCTTTTACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTATTCGATCGCCTTATCCAGATGATTGGTTCAGAAATTGAGAATGAAGACGGCAGCAACGATCTTATGGCGTATTGGCTGTCAAATACATCTGCATTATTGTTTTTACTTGAACAAAGCCTGATATCCGGCGACGTAATTCCTGCAAGCCCGGCTAGAAAACCATCTAATCCAACATCCCTTTTCGGAAGAATGACAGTTTTTCTCTCATCCCCTTCTTCTTCCAATCTTAATGCCCCTGCGTTGGACATTGTGGGCAAGGTAGAGGCTAAATACCCCGCAATGCTTTTCAAGCAGCAGCTCACAGCCTATATGGAGAAAGTATACGGCATCATTCGAGACAACTTAAAAAAGGAGTTAGCATCTGTACTTGCATTATGTATCCAGGCACCAAGAACTTCAAAGGGAGTGTTACGATCTGGTCGAAACTTCGGTAAAGATTCTGCCATGGTTCACTGGCAGACTATTATTGAATCCCTGAACACCCTCCTCTGTACATTGAAAGAAAACTTTGTTCCTTCAGTTCTTATACAAAAGATCTTCAGTCAAACATTCTCATATATTAATGTGCAACTCTTCAATAGTCTTCTTCTGCGTCGCGATTGTTGCACATTTAGCAACGGGGAATATGTGAAAGCTGGACTGGCTGAATTGGAGCTGTGGTGCTGTCAAGTAAAGGAAGAGTATGCAGGGCAATCTTGGGATGAACTGAAGCACATAAGACAAGCTGTTGGATTCTTGGTTATTCATCAGAAATATAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCTATCCTAAGTGTTCAGCAGCTGTATAGAATATGCTCACTTTACTGGGATGGTAACTACAATACCCTGACTGTGTCTCCAGAAGTGCTTTTGAGCATGAAGATGCTTATGACTGAGGACTCCAATACTGGCCAAAGTGATTCTTTCTTGTTGGATGATAGTTGCAGCATTCCCTTCTCAATGAATGATCTATCTACATCAATTCAATTGAAAGATTTCTCAGAAATGAAACCAGCAGATGAACTTCTTCAGAATCCAGCATTCCAATTCTTAAATTAG 4527 0.4076 MRYRMIFFIDLCAVTASTVVGSHIWVEDPDIAWIDGEVLEVNNEEIKVLCTSGKTVVVKASRVYHKDTEAPPSGVDDMIKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGATFGELSPHPFAVADAAYRLMINDGISQSILVSGESGAGKTESTKLLMRYLAYMGGRSATASEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPSEDIKKYKLGNPRTFHYLNQSNCYELEGLDESKEYSATRSAMDVVGISSEEQDAIFRVVAAILHLGNIEFVKGEEMDSSMPKDEKSLFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPETAAVSRDALAKIVYTRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKNNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKTEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRTDFTICHYAGDVTYQADYFLDKNKDYVVAEHQELLYASKCPFVSSLFLPSPQDSSKKSKFSSIGSQFKQQLQALLETLSGTEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDDFADRFGLLAPEVLDGSIDEVAACKRILESVGLKGYQIGKTKVFLRAGQLAELDTSRSVILGKSAIIIQRKVRSYFTRRSFISARLSAIQIQAVCRGQLARQVYEVKRKEAAILAIQSYHRMHIARTVYKELYTSAVSIQTGMRGMAARCELCFRRQTTASIVIQSHCRKYLTQLHFKRLKKAAIITQCAWRGKVARHELRQLKMAARETGALQAAKTQLEKQVEDLTLRLQLEKRLRVDIEEAKTQENKRLQSALLETQLQFKETRILLEKEREATKKAEERVPIIKEIPVVDHALLEKLSSENEKLKSMVSSLEKKIDETEKRYEEASRIGEERLKQALEAESKLTQLKDAMQRLEEKFLDIESANHILQKQSQLNSSVKTLAEHISTPVAEETCVTPGKQLGTESDAKLRRSFIERQLENVDSLVKCVMKNIGFDNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENEDGSNDLMAYWLSNTSALLFLLEQSLISGDVIPASPARKPSNPTSLFGRMTVFLSSPSSSNLNAPALDIVGKVEAKYPAMLFKQQLTAYMEKVYGIIRDNLKKELASVLALCIQAPRTSKGVLRSGRNFGKDSAMVHWQTIIESLNTLLCTLKENFVPSVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQVKEEYAGQSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICSLYWDGNYNTLTVSPEVLLSMKMLMTEDSNTGQSDSFLLDDSCSIPFSMNDLSTSIQLKDFSEMKPADELLQNPAFQFLN 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1868 1508 Gene3D - 679 746 - -
Lal1g1868 1508 ProSiteProfiles IQ motif profile. 819 848 IPR000048 GO:0005515
Lal1g1868 1508 Gene3D Kinesin motor domain 76 675 IPR036961 -
Lal1g1868 1508 ProSiteProfiles IQ motif profile. 867 896 IPR000048 GO:0005515
Lal1g1868 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 896 IPR027417 -
Lal1g1868 1508 PANTHER MYOSIN 13 1507 - -
Lal1g1868 1508 Coils Coil 985 1019 - -
Lal1g1868 1508 ProSiteProfiles IQ motif profile. 771 799 IPR000048 GO:0005515
Lal1g1868 1508 Coils Coil 1027 1061 - -
Lal1g1868 1508 Pfam Myosin N-terminal SH3-like domain 21 62 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 Gene3D - 748 796 - -
Lal1g1868 1508 Gene3D - 797 845 - -
Lal1g1868 1508 Gene3D - 846 895 - -
Lal1g1868 1508 SMART DIL_2 1330 1437 IPR002710 -
Lal1g1868 1508 ProSiteProfiles Myosin motor domain profile. 73 745 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 PRINTS Myosin heavy chain signature 103 122 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 PRINTS Myosin heavy chain signature 160 185 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 PRINTS Myosin heavy chain signature 209 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 PRINTS Myosin heavy chain signature 442 470 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 PRINTS Myosin heavy chain signature 495 523 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 Coils Coil 904 924 - -
Lal1g1868 1508 SMART iq_5 795 817 IPR000048 GO:0005515
Lal1g1868 1508 SMART iq_5 866 888 IPR000048 GO:0005515
Lal1g1868 1508 SMART iq_5 843 865 IPR000048 GO:0005515
Lal1g1868 1508 SMART iq_5 770 792 IPR000048 GO:0005515
Lal1g1868 1508 SMART iq_5 747 769 IPR000048 GO:0005515
Lal1g1868 1508 SMART iq_5 818 840 IPR000048 GO:0005515
Lal1g1868 1508 ProSiteProfiles IQ motif profile. 796 825 IPR000048 GO:0005515
Lal1g1868 1508 Gene3D - 265 323 - -
Lal1g1868 1508 CDD MYSc_Myo11 87 733 IPR036018 -
Lal1g1868 1508 Gene3D - 452 636 - -
Lal1g1868 1508 ProSiteProfiles Dilute domain profile. 1154 1455 IPR002710 -
Lal1g1868 1508 Pfam DIL domain 1331 1433 IPR002710 -
Lal1g1868 1508 Pfam IQ calmodulin-binding motif 774 791 IPR000048 GO:0005515
Lal1g1868 1508 Pfam IQ calmodulin-binding motif 847 865 IPR000048 GO:0005515
Lal1g1868 1508 Pfam IQ calmodulin-binding motif 869 888 IPR000048 GO:0005515
Lal1g1868 1508 Pfam IQ calmodulin-binding motif 750 768 IPR000048 GO:0005515
Lal1g1868 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 799 IPR027417 -
Lal1g1868 1508 CDD MyosinXI_CBD 1105 1477 IPR037975 GO:0007015
Lal1g1868 1508 SMART MYSc_2a 67 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 Pfam Myosin head (motor domain) 75 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal1g1868 1508 ProSiteProfiles IQ motif profile. 844 870 IPR000048 GO:0005515
Lal1g1868 1508 Gene3D Myosin VI head, motor domain, U50 subdomain 325 614 - -
Lal1g1868 1508 PANTHER MYOSIN-14 13 1507 - -
Lal1g1868 1508 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 19 68 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1868 Lal-Chr1 20954802 20967651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1868 20 1508 Myosins gene family AT5G43900 73.440 0.0 2256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1868 K10357 - gmx:100795648 2538.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1868 1 20954802 20967651 Lal1g1868 1 20954802 20967651 ECH
Lal11g1104 11 14724703 14739239 Lal1g1868 1 20954802 20967651 LSH
Lal1g1868 1 20954802 20967651 Lal13g0713 13 4648117 4663871 PCT
Lal1g1868 1 20954802 20967651 Lal24g0806 24 6369744 6393004 PCT
Lal13g1069 13 7966019 7985016 Lal1g1868 1 20954802 20967651 PCT
Lal24g0806 24 6369744 6393004 Lal1g1868 1 20954802 20967651 PCT
Lal13g0713 13 4648117 4663871 Lal1g1868 1 20954802 20967651 PCT