Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1865 ATGGCATCAGAAGATTTAGCCACTCAATTAACAGCACTTGTTGTAGATGACAATATGATAAATAGAAAGATTCATCAAAAGATATTGAAAAATGCTGGTGTGAAAAATCATGGAGTTGGAAATGGCAAAGAAGCTGTAGATATTCATGGCCATGGACAAAGCTTTGACCTAATTTTCATGGATTTGGATATGCCAATCATGAATGGCATTGAGGCAACAAAGAAACTTAGATCAATGGGAATTTGTAGCATAATTGTTGGTGTATCATCACGTTATATTGAAGAAGAGATTCAAGAATTTATGGAAGCTGGACTTGATGATTATCAAATAAAACCATTGACAAATGCTAAGCTTAGTTCAATTCTTCATAAGATCAACCCCAACTTTTCTTTTAAGTGA 399 0.3358 MASEDLATQLTALVVDDNMINRKIHQKILKNAGVKNHGVGNGKEAVDIHGHGQSFDLIFMDLDMPIMNGIEATKKLRSMGICSIIVGVSSRYIEEEIQEFMEAGLDDYQIKPLTNAKLSSILHKINPNFSFK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1865 132 Gene3D - 1 129 - -
Lal1g1865 132 SUPERFAMILY CheY-like 10 125 IPR011006 -
Lal1g1865 132 CDD REC_hyHK_CKI1_RcsC-like 13 122 - -
Lal1g1865 132 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 4 128 - -
Lal1g1865 132 SMART REC_2 10 122 IPR001789 GO:0000160
Lal1g1865 132 Coils Coil 132 132 - -
Lal1g1865 132 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Lal1g1865 132 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Lal1g1865 132 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1865 Lal-Chr1 20919674 20920787 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1865 10 118 Response Regulator Gene Family AT3G04280 48.649 5.32e-28 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal1g1865 Response_reg 5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1865 - - gmx:100794931 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1865 1 20919674 20920787 Lal1g1865 1 20919674 20920787 ECH
Lal11g1108 11 14824248 14825457 Lal1g1865 1 20919674 20920787 LSH
Lal1g1865 1 20919674 20920787 Lal20g0048 20 350911 352147 LSH