Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1859 ATGAATCATTGTGTTCCTGATTTCGATGACCAAGATTACCCAAAGAAACACTCCATGGGAGATGAAGATACCATGGAGCTGTTATGGCAAAACGGTCAAGTTGTGATGCAGAGCCAGAACCACCGACATATCAGAAAACCACCGCATCCTCCGCCGGCAAGAATCTCCGGTACATCAATTCGGCCAGAAGTGGTGAACTACAATAATAATAATCAGAATCTGTTCATGCAAGAAGATGAAATGACTTCATGGCTTCATCACTGTCCAATTGACTATGAAGATGATCAAAATTTCTGCGCCGATTTACTCTATTCGCTGCCAACGCCACCGGTTAACGGTAATCACCAAAGCAGCAATAACAACAACAGTGCCATGCAAACCCTTGCTCAAAATTCTCAATTGACGGAGCTCCGGCAGAGTCAGAAACCGGTGGCTCCTCGTCCTCCGATTCCACCGCCTAGGAGGACGGAGCAGGCGGTGCGTGCGAATACGCCGAACTTCGCTTACTTCTCGAAGCAAAATACCAGAACTGAGCCAGGACCTTCATCGAATTCGAGGAACGCTGCAAGGGAATCAACTATGGTGGATTCGTGCGAGACGCCTTTTCTAGCTTCGGAGGCGGCGGGGTCGAGATTCTCGGAGCCTACAGAAGGTGACGGTTTCGGCGGTAGGAGCATGAGCGCCACCACGACATCTGGCGGTGGAGGAAAGGATACGACGACGTTTGGTATGACTTCATCGCCGGGAGGATCGAGTAGCAGCGGTGAAATGGATCGGAAATTGACGGCGGAGGATCGGAAGCGGAAGGGGCGAGTGGAAGCGGAGGAATGGGAGAGTCGGAACGAGGATGTTGATTTTGAAAGTGGGGAAGGGAAAAAACAAGTCCGAGGATCATCTACAAAGAGATCACGTGCTGCAGAAGTTCATAATCTCTCTGAGAGGAAGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTTCAAGAACTTATACCACGTTGTAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCCATTGAATACTTGAAGTCACTACAGTTACAAGTGCAGATGATGTCCATGGGGTGTGGCATGGTACCTATGATGTTTGCTGGAATGCAGCCATACATGCCGGCAATGGGGATGGGTATGGGTATGGGAATGAACAGACAAGTGATGCCATTTCCGAATATGTTAGCCGGTTCGGCTTTGCCAGCTGCAACAACTCCTCATTTAGGACCAAGGTTTCCTATGCCTCCTTTCCATATGCCGCATGTTCCTGCACCCGATTCATCTCGAATGCAAGCAATGAATCAGACAAATAATAATATGCCCAACTCTGTTCCTATGCCTCTTCCAAATCAGTCATGTATCCCAAACATCACTGATCCTTATCAACAATACCTTGCTCCTCACCAGATGCAATTTCAATTAATGCAGAATCAGGCAATGAACCAACTAAATGTTAGCAAGCCAAGTACTAGTAGGGGCCCCGAGAATCCAGAAAACCATCCGTCAGGAGAAAAAATGATTGTTTGA 1542 0.478 MNHCVPDFDDQDYPKKHSMGDEDTMELLWQNGQVVMQSQNHRHIRKPPHPPPARISGTSIRPEVVNYNNNNQNLFMQEDEMTSWLHHCPIDYEDDQNFCADLLYSLPTPPVNGNHQSSNNNNSAMQTLAQNSQLTELRQSQKPVAPRPPIPPPRRTEQAVRANTPNFAYFSKQNTRTEPGPSSNSRNAARESTMVDSCETPFLASEAAGSRFSEPTEGDGFGGRSMSATTTSGGGGKDTTTFGMTSSPGGSSSSGEMDRKLTAEDRKRKGRVEAEEWESRNEDVDFESGEGKKQVRGSSTKRSRAAEVHNLSERKRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFAGMQPYMPAMGMGMGMGMNRQVMPFPNMLAGSALPAATTPHLGPRFPMPPFHMPHVPAPDSSRMQAMNQTNNNMPNSVPMPLPNQSCIPNITDPYQQYLAPHQMQFQLMQNQAMNQLNVSKPSTSRGPENPENHPSGEKMIV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1859 513 MobiDBLite consensus disorder prediction 258 314 - -
Lal1g1859 513 Pfam Helix-loop-helix DNA-binding domain 308 354 IPR011598 GO:0046983
Lal1g1859 513 MobiDBLite consensus disorder prediction 159 194 - -
Lal1g1859 513 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 508 - -
Lal1g1859 513 CDD bHLH_AtPIF_like 304 367 - -
Lal1g1859 513 MobiDBLite consensus disorder prediction 431 450 - -
Lal1g1859 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Lal1g1859 513 MobiDBLite consensus disorder prediction 223 257 - -
Lal1g1859 513 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 508 IPR031066 -
Lal1g1859 513 SMART finulus 310 359 IPR011598 GO:0046983
Lal1g1859 513 Gene3D - 299 362 IPR036638 GO:0046983
Lal1g1859 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 370 IPR036638 GO:0046983
Lal1g1859 513 MobiDBLite consensus disorder prediction 490 513 - -
Lal1g1859 513 MobiDBLite consensus disorder prediction 433 450 - -
Lal1g1859 513 MobiDBLite consensus disorder prediction 136 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1859 Lal-Chr1 20854616 20862725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1859 1 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.711 9.71e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g1859 HLH 2.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1859 - - gmx:100797225 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1859 1 20854616 20862725 Lal1g1859 1 20854616 20862725 ECH
Lal1g1859 1 20854616 20862725 Lal20g0049 20 358513 359568 LSH
Lal1g1859 1 20854616 20862725 Lal24g0809 24 6418444 6429853 PCT
Lal24g0809 24 6418444 6429853 Lal1g1859 1 20854616 20862725 PCT