Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1844 ATGTCAAACCCAATGTCTAACTCATCAGAATCAAACCCAAGAAGGAGTAAGGGTCGCCAAAAGATAGAGATGAAAAAGATGACCAATGAGAGTAACCTTCAAGTAACATTCTCTAAACGTCGCAATGGGCTTTTCAAGAAAGCTAGTGAACTTTGCACCCTTTGTGGTGCACAAGTTGCTCTCATTGTTTTCTCTCCTGCCGAGAAGGCTTTCTCTTTTGGTGACCCTAGTGTCAGTGCTGTCATTGACCGCTATATGATGATACCCCCACAACCAAACAATGCTACCATGCAGATTCTTGAGGCTCATCGTTGTGCAAATGTGCGTGAGATGAATACACACCTTACTCAGATCAATTCAGATCTTGAGATTGAGAAGATGTGCAATGATATGCTGAATAAGCAGAGAAAAGATGCACAAAAGCAGTTCTGGTGGGCTACACCAATTGAAGAGATGAACAATGCAGAACAACTCGAACAACTCAAGAAGGCTTTGGAGGATCTAAAGAAGAGTGTTCTTCTTCAAGCACAAAACCAGATTCCTCCTCAAAACCCTACTCCTCCTTCTAACCCTCCTCCACAGTTTTTTGCTGGTGGTTCTTCCTCTAACAACCCACCTTTTATGTTTCATCAGCCACCACCACAACTACAAATGGTTCCTCTTCCACCACCTCAATCGTTCTTTGAAGGTGGTTCCTCTTCAAACAACCCTCCTATGATGCAACCTAGTCATGTGTCTGATGGGGTACCCTCCATGATGATGCCCTACCCAGGTGGTTTCAATAATATGGGAGGATATGGACCTCAAGGTGGTTTCTTCTAA 822 0.4367 MSNPMSNSSESNPRRSKGRQKIEMKKMTNESNLQVTFSKRRNGLFKKASELCTLCGAQVALIVFSPAEKAFSFGDPSVSAVIDRYMMIPPQPNNATMQILEAHRCANVREMNTHLTQINSDLEIEKMCNDMLNKQRKDAQKQFWWATPIEEMNNAEQLEQLKKALEDLKKSVLLQAQNQIPPQNPTPPSNPPPQFFAGGSSSNNPPFMFHQPPPQLQMVPLPPPQSFFEGGSSSNNPPMMQPSHVSDGVPSMMMPYPGGFNNMGGYGPQGGFF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1844 273 Gene3D - 97 180 - -
Lal1g1844 273 MobiDBLite consensus disorder prediction 179 207 - -
Lal1g1844 273 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
Lal1g1844 273 PANTHER MADS BOX PROTEIN 17 179 - -
Lal1g1844 273 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Lal1g1844 273 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 179 - -
Lal1g1844 273 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Lal1g1844 273 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Lal1g1844 273 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Lal1g1844 273 Coils Coil 151 178 - -
Lal1g1844 273 CDD MADS_MEF2_like 18 86 IPR033896 GO:0000977|GO:0045944
Lal1g1844 273 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Lal1g1844 273 MobiDBLite consensus disorder prediction 1 32 - -
Lal1g1844 273 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Lal1g1844 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1844 Lal-Chr1 20706608 20707429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1844 14 207 Type I MADS-box Gene Family AT5G60440 52.020 8.64e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal1g1844 SRF-TF 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1844 - - lang:109356189 456.832