Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1840 ATGGGGAAGGGAGGGGAAAACTACGGAAAAAGAGAGAATTCGAATTCTGAGAATTCGGATCATGAAATCTTCAAAGCTTGGGCGAAAAACGTTGCGGAATGTGAAGAACACTTCAAGGTAAGTGTGAATAATGGTTTGAGCAACGAGGAGGTTGAGATTCGCCGAGGGATCTATGGATTGAACGAATTGGAGAAGCATGAAGGTCAATCGATTTGGAAGTTGGTTCTGGAACAGTTCAATGACACGCTGGTTCGGATTCTCCTCGCCGCCGCGATAATCTCCTTCGTGCTCGCGTGGTATGACGGAGAAGAAGGCGGCGAGATGGAAATAACCGCTTTCGTGGAGCCGTTGGTGATTTTCTTGATTTTAATTGTGAACGCTATCGTTGGCGTTTGGCAAGAGAGCAATGCTGAGAAAGCACTCGAAGCTTTAAAGGAGATTCAATCCGAGCACGCGACGGTTATTCGAGATAGCGAAAAAATTCCAGATTTACCGGCTAAGGAATTAGTTCCCGGTGATATTGTTGAGCTTAAGGTTGGTGATAAGGTTCCGGCCGATATGCGCATTGTGCAGTTGATCAGCTCAACTTTGAGGTTGGAGCAGGGATCATTAACAGGAGAGAGTGAAGCTGTGAATAAAACTAACAAGCACGTTCCAGAAGATACTGATATTCAGGGTAAGAGATGCATTGTTTTCGCGGGGACCACGGTTGTGAATGGGAACTGCATTTGCTTGGTTACTGAGATTGGGATGAATACTGAGATTGGGAAGGTGCATAACCAGATACACGAGGCATCGCAGAGTGAGGAGGATACACCATTGAAGAAGAAGCTGAATGAATTCGGAGAGACACTGACTATGATAATTGGATTGATATGCATATTGGTTTGGCTCATCAATGTTAAATACTTCCTGAGCTGGGAAATTGTTGATGGATGGCCCAGGAACTTTAAGTTCTCTTTCGAGAAATGTACTTACTACTTTGAGATCGCCGTGGCTTTGGCCGTGGCTGCTATTCCAGAAGGTTTGCCTGCGGTGATAACAACTTGCTTGGCATTAGGTACACGCAAGATGGCTCAGAAGAATGCGCTGGTTCGAAAGCTGCCGAGTGTGGAAACTCTGGGTTGTACCACTGTGATTTGTTCTGATAAAACTGGTACATTGACTACTAACCAGATGTCAGTGACGAAATTGGTTGCTATTGGGAGTACTGTAGATACGTTGCGAGCCTTCAAGGTGGAAGGAACTACCTACAATCCTGCTGATGGTAGAATAGAGAACTGGCCGGCAGGTAAACTGGATGCGAATCTTGAGATGATAGCAAAAATTGCTGCAGTTTGTAATGATGCTGGGGTCGCACAGTCGGGTCATAAGTTTGTTGCACACGGAATGCCAACTGAAGCAGCATTAAAGGTTTTGGTAGAGAAGATGGGCCTTCCTGAAGGATCCAAGGATGTACCATCAGCTAGTACACATAGTGTTTTACGTTGTTGCGAATGGTGGAATAAACATGACCCACGGGTTGCCACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTTGACTCTGGTCTGGAGAAAAAGTCGCTGCTGGTTAAGGGTGCTGTAGAAAACTTGTTAGAAAGAAGCTCCAAAATTCAGTTGCGCGATGGTTCTATTGTGAAACTGGATAATAATGCTAAGAACCTTGTATTGCAAGCTCTTCGTGAAATGTCAACTAGTGCATTACGTTGTTTGGGATTTGCATACAAGGATGAGCTCCCTGACTTCAAAAACTACAGTGGTAATGACGATCATCCAGCTCATCAGCTTTTGCTTAATCCTTCCAACTATTCTTCAATTGAAAGTGATCTCATTTTTGTTGGTTTGGTTGGGTTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCTATTGAAGACTGCAGAGCTGCTGGAATTCGTGTTATGGTTATTACTGGAGACAACAAGAACACTGCAGAAGCCATATGCCATGAAATAGGTGTATTTGGACCCAATGAAGACATTAGCTCGAGAAGTTTAACTGGCAAAGATTTTATGGAACTGGGTGATAAAAAAGCTCATCTGAGGCAGAGTGGTGGACTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTACTCAAAGATGATGGAGAGGTGGTGGCCATGACTGGAGATGGTGTTAATGATGCACCTGCCTTAAAGCTTGCTGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCGGATATGGTGTTGGCTGACGATAATTTTAGCTCAATAGTTTCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATTGGCGAGGTTGCTTCCATATTTCTAACTGCCGCTCTAGGTATTCCTGAAGGGTTGATACCTGTCCAGCTTCTCTGGGTCAATCTTGTCACTGATGGACCCCCAGCAACAGCCTTAGGATTTAATCCTCCTGATAAGGATATAATGAAGAAGCCTCCCCGTCGCAGTGATGACTCACTTATTAATTTGTGGATTCTATTCCGCTATATGGTTATTGGGGTTTATGTTGGATTAGCAACAGTTGGTGTCTTCATCATATGGTATACACATGGTTCCTTCTTGGGTATTAACCTTAGCGGGGACGGCCATACACTTGTCACTTATTCCCAACTTGCTAACTGGGGTCAATGCTCTTCATGGGATAACTTCACTGCTTCTCCCTTCACCGCTGGTAGTAAAGTTATATCATTTGATTCACCCTGCGACTATTTCCAGGCCGGCAAAGTGAAAGCTATGACACTCTCCCTCTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTATCTGAAGATGGAAGCCTTTTGACCATGCCCCCGTGGGTCAACCCTTGGCTTCTTCTGGCAATGTCTGTGTCATTTGGTCTGCACTTTTTGATCTTGTATGTGCCATTCTTAGCAAAAGTATTCGGTATCGTGCCCCTGAGCTTCAATGAGTGGCTTTTGGTTCTGGCTGTTGCGCTTCCCGTGATTCTAATAGACGAGATTCTGAAATTTGTCGGGAGGTGTACAAGTACAAGTGGGTCTCAAGCAGCGGCTGCAAGATCGAAACAAAAATCAGAATAG 3189 0.4465 MGKGGENYGKRENSNSENSDHEIFKAWAKNVAECEEHFKVSVNNGLSNEEVEIRRGIYGLNELEKHEGQSIWKLVLEQFNDTLVRILLAAAIISFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHATVIRDSEKIPDLPAKELVPGDIVELKVGDKVPADMRIVQLISSTLRLEQGSLTGESEAVNKTNKHVPEDTDIQGKRCIVFAGTTVVNGNCICLVTEIGMNTEIGKVHNQIHEASQSEEDTPLKKKLNEFGETLTMIIGLICILVWLINVKYFLSWEIVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGSTVDTLRAFKVEGTTYNPADGRIENWPAGKLDANLEMIAKIAAVCNDAGVAQSGHKFVAHGMPTEAALKVLVEKMGLPEGSKDVPSASTHSVLRCCEWWNKHDPRVATLEFDRDRKSMGVIVDSGLEKKSLLVKGAVENLLERSSKIQLRDGSIVKLDNNAKNLVLQALREMSTSALRCLGFAYKDELPDFKNYSGNDDHPAHQLLLNPSNYSSIESDLIFVGLVGLRDPPREEVYQAIEDCRAAGIRVMVITGDNKNTAEAICHEIGVFGPNEDISSRSLTGKDFMELGDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKDDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSSIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYMVIGVYVGLATVGVFIIWYTHGSFLGINLSGDGHTLVTYSQLANWGQCSSWDNFTASPFTAGSKVISFDSPCDYFQAGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKVFGIVPLSFNEWLLVLAVALPVILIDEILKFVGRCTSTSGSQAAAARSKQKSE 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1840 1062 Pfam E1-E2 ATPase 147 361 - -
Lal1g1840 1062 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1044 IPR023298 -
Lal1g1840 1062 Gene3D - 391 632 IPR023299 GO:0000166
Lal1g1840 1062 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Lal1g1840 1062 Gene3D - 77 1043 - -
Lal1g1840 1062 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1059 - -
Lal1g1840 1062 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Lal1g1840 1062 Gene3D - 44 265 - -
Lal1g1840 1062 SFLD p-type atpase 362 783 IPR044492 -
Lal1g1840 1062 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal1g1840 1062 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal1g1840 1062 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal1g1840 1062 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Lal1g1840 1062 Pfam Cation transporting ATPase, C-terminus 816 1041 IPR006068 -
Lal1g1840 1062 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Lal1g1840 1062 SFLD Haloacid Dehalogenase 362 783 - -
Lal1g1840 1062 Gene3D - 378 776 IPR023214 -
Lal1g1840 1062 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Lal1g1840 1062 SUPERFAMILY HAD-like 622 835 IPR036412 -
Lal1g1840 1062 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Lal1g1840 1062 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Lal1g1840 1062 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Lal1g1840 1062 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Lal1g1840 1062 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Lal1g1840 1062 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Lal1g1840 1062 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1059 - -
Lal1g1840 1062 SUPERFAMILY Calcium ATPase, transduction domain A 149 261 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1840 Lal-Chr1 20670598 20676865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1840 1 1062 Primary Pumps ATPases(2) AT1G07810 80.245 0.0 1749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1840 K01537 - gmx:100788807 1883.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1840 1 20670598 20676865 Lal1g1840 1 20670598 20676865 ECH
Lal11g1131 11 15058763 15064960 Lal1g1840 1 20670598 20676865 LSH
Lal1g1840 1 20670598 20676865 Lal20g0070 20 465505 471429 LSH